Results 81 - 93 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28141 | 3' | -59.4 | NC_005887.1 | + | 37400 | 0.66 | 0.433846 |
Target: 5'- uGGCGCugCGCGgucgcgacUGcCUGCACgccaggUGCGg -3' miRNA: 3'- -CCGCGugGCGC--------AC-GACGUGaag---GCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 32312 | 0.67 | 0.38772 |
Target: 5'- cGGCGCGCCGCaGUGCguaggaccaCACgccgaugCCgGCGa -3' miRNA: 3'- -CCGCGUGGCG-CACGac-------GUGaa-----GG-CGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 417 | 0.67 | 0.386831 |
Target: 5'- -aCGCGCCGCGccgcccgcuguUGCUGCGCUcgaacccUCUgGCGc -3' miRNA: 3'- ccGCGUGGCGC-----------ACGACGUGA-------AGG-CGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 5159 | 0.68 | 0.313228 |
Target: 5'- cGGCGCGCCGCugaUGCUGauggcaCGCGu -3' miRNA: 3'- -CCGCGUGGCGc--ACGACgugaagGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 1487 | 0.68 | 0.328801 |
Target: 5'- cGGCGUGCgGCGcucGCgcgGCGCggCCGUGc -3' miRNA: 3'- -CCGCGUGgCGCa--CGa--CGUGaaGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 2924 | 0.68 | 0.328801 |
Target: 5'- cGC-CGCCGCcaaGCUGCGCaagcgCCGCGg -3' miRNA: 3'- cCGcGUGGCGca-CGACGUGaa---GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 3248 | 0.68 | 0.344938 |
Target: 5'- -cCGCGCCGCucgcGCUGCGCaacuucgucgCCGCGa -3' miRNA: 3'- ccGCGUGGCGca--CGACGUGaa--------GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 4215 | 0.68 | 0.344938 |
Target: 5'- cGCGCGCaggagaaagGCGUGCUGCucgcgccgacGCUcggCCGCa -3' miRNA: 3'- cCGCGUGg--------CGCACGACG----------UGAa--GGCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 22988 | 0.68 | 0.344938 |
Target: 5'- uGGCGCGuuGCc-GCUGaucgacgccgguCGCUUCUGCGa -3' miRNA: 3'- -CCGCGUggCGcaCGAC------------GUGAAGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 41620 | 0.68 | 0.344938 |
Target: 5'- cGGCGCGgcCCGUGaggaucUGCUGCG--UCUGCGc -3' miRNA: 3'- -CCGCGU--GGCGC------ACGACGUgaAGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 26428 | 0.67 | 0.353218 |
Target: 5'- cGCGCGggaaCGCGcGCUGCAg--CCGCGc -3' miRNA: 3'- cCGCGUg---GCGCaCGACGUgaaGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 21265 | 0.67 | 0.370194 |
Target: 5'- gGGgGCACCGCGgcgGCggcguaUGCGCUgcuggcgUCGCc -3' miRNA: 3'- -CCgCGUGGCGCa--CG------ACGUGAa------GGCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 14515 | 0.66 | 0.443448 |
Target: 5'- uGGUGguCCGCuUGCagGCGCggCCGuCGg -3' miRNA: 3'- -CCGCguGGCGcACGa-CGUGaaGGC-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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