miRNA display CGI


Results 21 - 40 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 3' -59.4 NC_005887.1 + 2734 0.67 0.396685
Target:  5'- cGCGCACCaG-GUGCuUGUGCUcgcCCGCGc -3'
miRNA:   3'- cCGCGUGG-CgCACG-ACGUGAa--GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 17584 0.67 0.396685
Target:  5'- uGC-CGCCcucgaGCGUGC-GCAUUUCCGUGc -3'
miRNA:   3'- cCGcGUGG-----CGCACGaCGUGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 42079 0.67 0.396685
Target:  5'- cGCGCGCCGCG-GC-GaCACUcgacgugggCCGCa -3'
miRNA:   3'- cCGCGUGGCGCaCGaC-GUGAa--------GGCGc -5'
28141 3' -59.4 NC_005887.1 + 32312 0.67 0.38772
Target:  5'- cGGCGCGCCGCaGUGCguaggaccaCACgccgaugCCgGCGa -3'
miRNA:   3'- -CCGCGUGGCG-CACGac-------GUGaa-----GG-CGC- -5'
28141 3' -59.4 NC_005887.1 + 15317 0.67 0.38772
Target:  5'- cGCaGCACUGCG-GCUGCcuGCUUcgggCCGCc -3'
miRNA:   3'- cCG-CGUGGCGCaCGACG--UGAA----GGCGc -5'
28141 3' -59.4 NC_005887.1 + 417 0.67 0.386831
Target:  5'- -aCGCGCCGCGccgcccgcuguUGCUGCGCUcgaacccUCUgGCGc -3'
miRNA:   3'- ccGCGUGGCGC-----------ACGACGUGA-------AGG-CGC- -5'
28141 3' -59.4 NC_005887.1 + 4682 0.67 0.378889
Target:  5'- cGGCcaccgGCGCCGCGgcgagcaucUGUUGCAUcUgCGCGg -3'
miRNA:   3'- -CCG-----CGUGGCGC---------ACGACGUGaAgGCGC- -5'
28141 3' -59.4 NC_005887.1 + 5361 0.67 0.378889
Target:  5'- uGGCGUagaacuucGCCGCGcGCUGCucggGCgaCUGCGu -3'
miRNA:   3'- -CCGCG--------UGGCGCaCGACG----UGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 21265 0.67 0.370194
Target:  5'- gGGgGCACCGCGgcgGCggcguaUGCGCUgcuggcgUCGCc -3'
miRNA:   3'- -CCgCGUGGCGCa--CG------ACGUGAa------GGCGc -5'
28141 3' -59.4 NC_005887.1 + 13681 0.67 0.361636
Target:  5'- cGGC-CGCCGCGcGCcGCGCUgCCaGCa -3'
miRNA:   3'- -CCGcGUGGCGCaCGaCGUGAaGG-CGc -5'
28141 3' -59.4 NC_005887.1 + 5556 0.67 0.361636
Target:  5'- cGGUGCugcgGCCG-GUGCUGCGCcaucggcCUGCGu -3'
miRNA:   3'- -CCGCG----UGGCgCACGACGUGaa-----GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 37400 0.67 0.361636
Target:  5'- cGGCG-ACCGaugccaGUGCcgGCGCUgCUGCGa -3'
miRNA:   3'- -CCGCgUGGCg-----CACGa-CGUGAaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 26428 0.67 0.353218
Target:  5'- cGCGCGggaaCGCGcGCUGCAg--CCGCGc -3'
miRNA:   3'- cCGCGUg---GCGCaCGACGUgaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 41620 0.68 0.344938
Target:  5'- cGGCGCGgcCCGUGaggaucUGCUGCG--UCUGCGc -3'
miRNA:   3'- -CCGCGU--GGCGC------ACGACGUgaAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 3248 0.68 0.344938
Target:  5'- -cCGCGCCGCucgcGCUGCGCaacuucgucgCCGCGa -3'
miRNA:   3'- ccGCGUGGCGca--CGACGUGaa--------GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 4215 0.68 0.344938
Target:  5'- cGCGCGCaggagaaagGCGUGCUGCucgcgccgacGCUcggCCGCa -3'
miRNA:   3'- cCGCGUGg--------CGCACGACG----------UGAa--GGCGc -5'
28141 3' -59.4 NC_005887.1 + 22988 0.68 0.344938
Target:  5'- uGGCGCGuuGCc-GCUGaucgacgccgguCGCUUCUGCGa -3'
miRNA:   3'- -CCGCGUggCGcaCGAC------------GUGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 2924 0.68 0.328801
Target:  5'- cGC-CGCCGCcaaGCUGCGCaagcgCCGCGg -3'
miRNA:   3'- cCGcGUGGCGca-CGACGUGaa---GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 40979 0.68 0.328801
Target:  5'- cGGUGCGCgCGCG-GUaGCcCUUCgGCGg -3'
miRNA:   3'- -CCGCGUG-GCGCaCGaCGuGAAGgCGC- -5'
28141 3' -59.4 NC_005887.1 + 1487 0.68 0.328801
Target:  5'- cGGCGUGCgGCGcucGCgcgGCGCggCCGUGc -3'
miRNA:   3'- -CCGCGUGgCGCa--CGa--CGUGaaGGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.