Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28142 | 3' | -54.3 | NC_005887.1 | + | 41622 | 0.68 | 0.589093 |
Target: 5'- cUCGGCGcuggcugacuucGCGUGcGCGccGAGCGccUCGCg -3' miRNA: 3'- cAGCCGC------------CGUAC-CGCuuCUUGU--AGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 30701 | 0.68 | 0.589093 |
Target: 5'- cUCGGCGaGCAggUGcGCGAGcAGCuuGUCGCg -3' miRNA: 3'- cAGCCGC-CGU--AC-CGCUUcUUG--UAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 40788 | 0.68 | 0.577891 |
Target: 5'- -cCGGCGGUcgagguucGUGGCGgcGAcGCGcCGCu -3' miRNA: 3'- caGCCGCCG--------UACCGCuuCU-UGUaGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 17909 | 0.68 | 0.577891 |
Target: 5'- uUCGGCGGCGUcacaGGUuGGAcGGACG-CGCu -3' miRNA: 3'- cAGCCGCCGUA----CCG-CUU-CUUGUaGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 21262 | 0.68 | 0.55232 |
Target: 5'- cUCGGgGGCAccgcGGCGgcGGcguaugcgcugcugGCGUCGCc -3' miRNA: 3'- cAGCCgCCGUa---CCGCuuCU--------------UGUAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 22147 | 0.68 | 0.544603 |
Target: 5'- cUCGGCuuCAUcGGCGAAGGGCugacgCGCa -3' miRNA: 3'- cAGCCGccGUA-CCGCUUCUUGua---GCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 16201 | 0.68 | 0.544603 |
Target: 5'- -cCGGUGGU-UGGCG-GGGugGUUGCg -3' miRNA: 3'- caGCCGCCGuACCGCuUCUugUAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 6590 | 0.69 | 0.538016 |
Target: 5'- uUCGGCGGg--GGCGAugccgucauugccguAGAACAgcgucugCGCa -3' miRNA: 3'- cAGCCGCCguaCCGCU---------------UCUUGUa------GCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 29503 | 0.69 | 0.53364 |
Target: 5'- -cCGGCGGCcucgacGGCGGgcgcguuguAGAACAgcacgUCGCg -3' miRNA: 3'- caGCCGCCGua----CCGCU---------UCUUGU-----AGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 18549 | 0.69 | 0.5271 |
Target: 5'- gGUgGGCGGCGgcgccggcuucgcgGGCGAcauGcuCGUCGCg -3' miRNA: 3'- -CAgCCGCCGUa-------------CCGCUu--CuuGUAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 8167 | 0.69 | 0.511961 |
Target: 5'- cUCGGCGaGCGcGGCGAGcuGCG-CGCg -3' miRNA: 3'- cAGCCGC-CGUaCCGCUUcuUGUaGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 7476 | 0.69 | 0.501257 |
Target: 5'- -gCGGCGGCgggugcgaccGUGGCGAu---CGUCGUc -3' miRNA: 3'- caGCCGCCG----------UACCGCUucuuGUAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 17155 | 0.69 | 0.490654 |
Target: 5'- gGUCGGCGaagaucGCGaGGCGuGGGAGCG-CGCg -3' miRNA: 3'- -CAGCCGC------CGUaCCGC-UUCUUGUaGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 720 | 0.7 | 0.469768 |
Target: 5'- gGUCGGCGGuCAUGcGCGu---GCGcUCGCc -3' miRNA: 3'- -CAGCCGCC-GUAC-CGCuucuUGU-AGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 29762 | 0.7 | 0.469768 |
Target: 5'- -cCGGCGaGCugaucGCGAGGAucgccGCGUCGCg -3' miRNA: 3'- caGCCGC-CGuac--CGCUUCU-----UGUAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 19206 | 0.7 | 0.459497 |
Target: 5'- --aGGCGGCGcGGUuacGAcGAGCGUCGUg -3' miRNA: 3'- cagCCGCCGUaCCG---CUuCUUGUAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 14539 | 0.7 | 0.449346 |
Target: 5'- cGUCGGCGGCGcGuCGAucGGcAUGUCGCg -3' miRNA: 3'- -CAGCCGCCGUaCcGCU--UCuUGUAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 5826 | 0.7 | 0.43932 |
Target: 5'- aGUCGGCGcGgGUcGCGAAGGGCGaaGCg -3' miRNA: 3'- -CAGCCGC-CgUAcCGCUUCUUGUagCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 30957 | 0.7 | 0.429423 |
Target: 5'- uGUCGGCGcccGCGUacGUGAGGAACuUCGCc -3' miRNA: 3'- -CAGCCGC---CGUAc-CGCUUCUUGuAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 4528 | 0.7 | 0.429423 |
Target: 5'- -aCGGCGGCGUcccggucgaGGCGAuGAGCAcCGa -3' miRNA: 3'- caGCCGCCGUA---------CCGCUuCUUGUaGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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