miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28143 5' -54.7 NC_005887.1 + 1295 0.7 0.383487
Target:  5'- -cGACGGGcGCGACGCCCGGUu----- -3'
miRNA:   3'- acUUGUUC-CGCUGCGGGCCGuucaua -5'
28143 5' -54.7 NC_005887.1 + 1444 0.71 0.347665
Target:  5'- aUGAACGAGcGCGACGCgCGGgaCAGGa-- -3'
miRNA:   3'- -ACUUGUUC-CGCUGCGgGCC--GUUCaua -5'
28143 5' -54.7 NC_005887.1 + 4392 0.73 0.248245
Target:  5'- uUGAACAAGGCaauGCGCgCCGGCGAa--- -3'
miRNA:   3'- -ACUUGUUCCGc--UGCG-GGCCGUUcaua -5'
28143 5' -54.7 NC_005887.1 + 4523 0.66 0.650399
Target:  5'- cGAcUAcGGCGGCGuCCCGGuCGAGg-- -3'
miRNA:   3'- aCUuGUuCCGCUGC-GGGCC-GUUCaua -5'
28143 5' -54.7 NC_005887.1 + 7122 0.68 0.493652
Target:  5'- cGAgGCGGGGCGGCGCUgCGGCGc---- -3'
miRNA:   3'- aCU-UGUUCCGCUGCGG-GCCGUucaua -5'
28143 5' -54.7 NC_005887.1 + 7686 0.67 0.548326
Target:  5'- gGggUucuucGGUGGCGCCC-GCAAGUAc -3'
miRNA:   3'- aCuuGuu---CCGCUGCGGGcCGUUCAUa -5'
28143 5' -54.7 NC_005887.1 + 7742 0.65 0.660655
Target:  5'- cGAGCGcgaaaaaGGGCGAgGUgaUCGGCAAGg-- -3'
miRNA:   3'- aCUUGU-------UCCGCUgCG--GGCCGUUCaua -5'
28143 5' -54.7 NC_005887.1 + 8180 0.73 0.276077
Target:  5'- cGAACA--GCGGCGCCuCGGCGAGc-- -3'
miRNA:   3'- aCUUGUucCGCUGCGG-GCCGUUCaua -5'
28143 5' -54.7 NC_005887.1 + 13203 0.68 0.492583
Target:  5'- -cGACGAGaCGAgGCCCGGCAcgcucgaGGUGUc -3'
miRNA:   3'- acUUGUUCcGCUgCGGGCCGU-------UCAUA- -5'
28143 5' -54.7 NC_005887.1 + 14215 0.74 0.222168
Target:  5'- cGGACAGGGCGGCGCCgcgcuguucggcgCGGCAu---- -3'
miRNA:   3'- aCUUGUUCCGCUGCGG-------------GCCGUucaua -5'
28143 5' -54.7 NC_005887.1 + 18070 1.06 0.001035
Target:  5'- gUGAACAAGGCGACGCCCGGCAAGUAUg -3'
miRNA:   3'- -ACUUGUUCCGCUGCGGGCCGUUCAUA- -5'
28143 5' -54.7 NC_005887.1 + 20606 0.66 0.616153
Target:  5'- cGAAUccGGCuGCGCCCGacGCAAGg-- -3'
miRNA:   3'- aCUUGuuCCGcUGCGGGC--CGUUCaua -5'
28143 5' -54.7 NC_005887.1 + 23988 0.72 0.298547
Target:  5'- cGAgcGCGAGGCGGCGCUCGGgAAu--- -3'
miRNA:   3'- aCU--UGUUCCGCUGCGGGCCgUUcaua -5'
28143 5' -54.7 NC_005887.1 + 24212 0.68 0.526191
Target:  5'- --uGCGAGGCGAUcucgaaGCCCGGCGc---- -3'
miRNA:   3'- acuUGUUCCGCUG------CGGGCCGUucaua -5'
28143 5' -54.7 NC_005887.1 + 30269 0.68 0.537219
Target:  5'- -cGACGcGGCGugGCuggCCGGCGAGa-- -3'
miRNA:   3'- acUUGUuCCGCugCG---GGCCGUUCaua -5'
28143 5' -54.7 NC_005887.1 + 31122 0.78 0.13041
Target:  5'- aGAGCAGGGCGAgcuUGCCgGGCAGGc-- -3'
miRNA:   3'- aCUUGUUCCGCU---GCGGgCCGUUCaua -5'
28143 5' -54.7 NC_005887.1 + 36125 0.68 0.504401
Target:  5'- cGAACGuccGGCGugGCUCGGUGAu--- -3'
miRNA:   3'- aCUUGUu--CCGCugCGGGCCGUUcaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.