miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 5' -56.1 NC_005887.1 + 3310 0.71 0.330635
Target:  5'- --uGCGCaGCGC-GAgCGGCGCGGUCg -3'
miRNA:   3'- aguCGUGcUGCGaCUaGCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 16481 0.71 0.321751
Target:  5'- gCGGCAgGAUccggcggGCUGGUCGGCGauGUCg -3'
miRNA:   3'- aGUCGUgCUG-------CGACUAGCCGCgcUAG- -5'
28144 5' -56.1 NC_005887.1 + 472 0.7 0.373264
Target:  5'- gCGGCGCGGCGCgucuucgCGGCGCu--- -3'
miRNA:   3'- aGUCGUGCUGCGacua---GCCGCGcuag -5'
28144 5' -56.1 NC_005887.1 + 16014 0.7 0.382226
Target:  5'- gCGGCguGCGGCGCgUGGcCGGCGC-AUCg -3'
miRNA:   3'- aGUCG--UGCUGCG-ACUaGCCGCGcUAG- -5'
28144 5' -56.1 NC_005887.1 + 5221 0.7 0.355773
Target:  5'- aUCAGCaucaGCGGCGCgccGAcgUCGggcaGCGCGGUCa -3'
miRNA:   3'- -AGUCG----UGCUGCGa--CU--AGC----CGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 32739 0.7 0.36972
Target:  5'- gUAGCGCGGCGCUcgcgugcgcgcCGGCGCGcgCc -3'
miRNA:   3'- aGUCGUGCUGCGAcua--------GCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 12483 0.7 0.382226
Target:  5'- cUCAGCuCG-CGCUGAUCgauucagcGGCGCugGAUCc -3'
miRNA:   3'- -AGUCGuGCuGCGACUAG--------CCGCG--CUAG- -5'
28144 5' -56.1 NC_005887.1 + 8375 0.69 0.429125
Target:  5'- aCAGCGCGuccauCGCguucgGAUCGGUGaCGcgCu -3'
miRNA:   3'- aGUCGUGCu----GCGa----CUAGCCGC-GCuaG- -5'
28144 5' -56.1 NC_005887.1 + 10083 0.69 0.400575
Target:  5'- cCAGCGCGgccGCGCgUGAUgUGGUcgGCGAUCu -3'
miRNA:   3'- aGUCGUGC---UGCG-ACUA-GCCG--CGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 14822 0.69 0.39133
Target:  5'- gCGGcCGCGACGCUGAU-GGCGgGcacguUCg -3'
miRNA:   3'- aGUC-GUGCUGCGACUAgCCGCgCu----AG- -5'
28144 5' -56.1 NC_005887.1 + 17744 0.69 0.400575
Target:  5'- cUCGGCACGGCcgcgcgGCUGAU-GGCGCccGGUUc -3'
miRNA:   3'- -AGUCGUGCUG------CGACUAgCCGCG--CUAG- -5'
28144 5' -56.1 NC_005887.1 + 9896 0.69 0.400575
Target:  5'- cCAGC-CGGUGCaGGUCGGCGgcaCGAUCa -3'
miRNA:   3'- aGUCGuGCUGCGaCUAGCCGC---GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 9368 0.69 0.409957
Target:  5'- aUCGGCGacaGACGaauacgggucGAUCGGCGCGGa- -3'
miRNA:   3'- -AGUCGUg--CUGCga--------CUAGCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 7126 0.69 0.429125
Target:  5'- gCGGgGCGGCGCUG--CGGCGCcguUCa -3'
miRNA:   3'- aGUCgUGCUGCGACuaGCCGCGcu-AG- -5'
28144 5' -56.1 NC_005887.1 + 7446 0.69 0.390414
Target:  5'- gUCGGCgagcugaacGCGGCGUUGucGUCGgucugcaGCGCGAUCg -3'
miRNA:   3'- -AGUCG---------UGCUGCGAC--UAGC-------CGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 3602 0.69 0.39133
Target:  5'- cUCGGCGaaccagaGGCGCUGcAUCGGCacguuGCGGUa -3'
miRNA:   3'- -AGUCGUg------CUGCGAC-UAGCCG-----CGCUAg -5'
28144 5' -56.1 NC_005887.1 + 17701 0.69 0.409957
Target:  5'- gCAGCuucACGGCGCUGAccgUCGuGCGCa--- -3'
miRNA:   3'- aGUCG---UGCUGCGACU---AGC-CGCGcuag -5'
28144 5' -56.1 NC_005887.1 + 3371 0.69 0.409957
Target:  5'- uUCAGC-CGAUGCcaGAgcugcgucgcCGGCGUGAUCa -3'
miRNA:   3'- -AGUCGuGCUGCGa-CUa---------GCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 4358 0.69 0.419475
Target:  5'- cUCGGCGagGAUGUcGAccUCGcGCGCGAUCa -3'
miRNA:   3'- -AGUCGUg-CUGCGaCU--AGC-CGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 28008 0.69 0.432046
Target:  5'- gUCGGC-CGGCGUUucuucacGAauccacuucacugcgUCGGCGUGAUCg -3'
miRNA:   3'- -AGUCGuGCUGCGA-------CU---------------AGCCGCGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.