miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28144 5' -56.1 NC_005887.1 + 5984 0.75 0.186038
Target:  5'- gCAGCACGAucaagauguuuuCGCaGAUCGGUGCG-UCg -3'
miRNA:   3'- aGUCGUGCU------------GCGaCUAGCCGCGCuAG- -5'
28144 5' -56.1 NC_005887.1 + 37394 0.75 0.16665
Target:  5'- uUCAGCugG-CGCUGcgCGGuCGCGAc- -3'
miRNA:   3'- -AGUCGugCuGCGACuaGCC-GCGCUag -5'
28144 5' -56.1 NC_005887.1 + 21066 0.77 0.137051
Target:  5'- gUCGGCGCcggugugggguGGCGUUGGcuugaacgguaUCGGCGCGGUCg -3'
miRNA:   3'- -AGUCGUG-----------CUGCGACU-----------AGCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 14223 0.79 0.097326
Target:  5'- gCGGCGCcGCGCUGuUCGGCGCGGc- -3'
miRNA:   3'- aGUCGUGcUGCGACuAGCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 17538 0.79 0.086694
Target:  5'- gCGGCAUGACGUcGGUCGGCGCGu-- -3'
miRNA:   3'- aGUCGUGCUGCGaCUAGCCGCGCuag -5'
28144 5' -56.1 NC_005887.1 + 5133 0.72 0.263208
Target:  5'- cUCGGCAUGaccGCGCUGcccgacGUCGGCGCGc-- -3'
miRNA:   3'- -AGUCGUGC---UGCGAC------UAGCCGCGCuag -5'
28144 5' -56.1 NC_005887.1 + 2646 0.72 0.277162
Target:  5'- gUCAGUACc-UGCUGGUgGGCGCGggCg -3'
miRNA:   3'- -AGUCGUGcuGCGACUAgCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 9368 0.69 0.409957
Target:  5'- aUCGGCGacaGACGaauacgggucGAUCGGCGCGGa- -3'
miRNA:   3'- -AGUCGUg--CUGCga--------CUAGCCGCGCUag -5'
28144 5' -56.1 NC_005887.1 + 9896 0.69 0.400575
Target:  5'- cCAGC-CGGUGCaGGUCGGCGgcaCGAUCa -3'
miRNA:   3'- aGUCGuGCUGCGaCUAGCCGC---GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 17744 0.69 0.400575
Target:  5'- cUCGGCACGGCcgcgcgGCUGAU-GGCGCccGGUUc -3'
miRNA:   3'- -AGUCGUGCUG------CGACUAgCCGCG--CUAG- -5'
28144 5' -56.1 NC_005887.1 + 14822 0.69 0.39133
Target:  5'- gCGGcCGCGACGCUGAU-GGCGgGcacguUCg -3'
miRNA:   3'- aGUC-GUGCUGCGACUAgCCGCgCu----AG- -5'
28144 5' -56.1 NC_005887.1 + 12483 0.7 0.382226
Target:  5'- cUCAGCuCG-CGCUGAUCgauucagcGGCGCugGAUCc -3'
miRNA:   3'- -AGUCGuGCuGCGACUAG--------CCGCG--CUAG- -5'
28144 5' -56.1 NC_005887.1 + 32739 0.7 0.36972
Target:  5'- gUAGCGCGGCGCUcgcgugcgcgcCGGCGCGcgCc -3'
miRNA:   3'- aGUCGUGCUGCGAcua--------GCCGCGCuaG- -5'
28144 5' -56.1 NC_005887.1 + 12705 0.71 0.328194
Target:  5'- gUCAcGCGCGcACGCUGGUCGcgcagcagcagaauGCGCucGAUCg -3'
miRNA:   3'- -AGU-CGUGC-UGCGACUAGC--------------CGCG--CUAG- -5'
28144 5' -56.1 NC_005887.1 + 16481 0.71 0.321751
Target:  5'- gCGGCAgGAUccggcggGCUGGUCGGCGauGUCg -3'
miRNA:   3'- aGUCGUgCUG-------CGACUAGCCGCgcUAG- -5'
28144 5' -56.1 NC_005887.1 + 22988 0.71 0.314616
Target:  5'- -uGGCGCGuugcCGCUGAUCGaCGcCGGUCg -3'
miRNA:   3'- agUCGUGCu---GCGACUAGCcGC-GCUAG- -5'
28144 5' -56.1 NC_005887.1 + 12891 0.71 0.299191
Target:  5'- --uGCGCGA-GCUGAUCGGCacgGCGAg- -3'
miRNA:   3'- aguCGUGCUgCGACUAGCCG---CGCUag -5'
28144 5' -56.1 NC_005887.1 + 16732 0.72 0.287278
Target:  5'- cCGGCGCGAucaagucggauuacaUGCggcagacGAUgGGCGCGAUCg -3'
miRNA:   3'- aGUCGUGCU---------------GCGa------CUAgCCGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 35656 0.72 0.284358
Target:  5'- -gAGCuCGACGCUG-UCGacauacagcagcGCGCGAUCg -3'
miRNA:   3'- agUCGuGCUGCGACuAGC------------CGCGCUAG- -5'
28144 5' -56.1 NC_005887.1 + 19362 0.72 0.284358
Target:  5'- gCAGCA-GACGCgug-CGGCGaCGAUCa -3'
miRNA:   3'- aGUCGUgCUGCGacuaGCCGC-GCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.