miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28146 3' -60.2 NC_005887.1 + 23536 0.66 0.363925
Target:  5'- cAAGGGCGuCGcCGGCuGCcgGGCuuccgguggaagcgGCGGg -3'
miRNA:   3'- cUUCCCGU-GC-GCCGuCGuaCCG--------------CGUC- -5'
28146 3' -60.2 NC_005887.1 + 26206 0.66 0.357916
Target:  5'- -cGGGGCG-GCGGUggccggccugcAGC-UGGCGCAc -3'
miRNA:   3'- cuUCCCGUgCGCCG-----------UCGuACCGCGUc -5'
28146 3' -60.2 NC_005887.1 + 32763 0.66 0.357916
Target:  5'- ---cGGCGCGCGccauGCAGCcgGcucguGCGCAGg -3'
miRNA:   3'- cuucCCGUGCGC----CGUCGuaC-----CGCGUC- -5'
28146 3' -60.2 NC_005887.1 + 35383 0.66 0.357916
Target:  5'- ---cGGCGCGCGGCAGU--GGagcgauGCAGa -3'
miRNA:   3'- cuucCCGUGCGCCGUCGuaCCg-----CGUC- -5'
28146 3' -60.2 NC_005887.1 + 3772 0.66 0.357916
Target:  5'- cGGucGGCGCGCGGCucgacGGCGUGGUa--- -3'
miRNA:   3'- -CUucCCGUGCGCCG-----UCGUACCGcguc -5'
28146 3' -60.2 NC_005887.1 + 600 0.66 0.357916
Target:  5'- cGgcGcGGCGCGCGGCGGCcgacGCGUucAGa -3'
miRNA:   3'- -CuuC-CCGUGCGCCGUCGuac-CGCG--UC- -5'
28146 3' -60.2 NC_005887.1 + 25082 0.66 0.349454
Target:  5'- ---cGGCugGcCGGCGGCcgccGGCGCGa -3'
miRNA:   3'- cuucCCGugC-GCCGUCGua--CCGCGUc -5'
28146 3' -60.2 NC_005887.1 + 9912 0.66 0.341136
Target:  5'- ---cGGCGCGCGGCguucAGguUGGcCGCGc -3'
miRNA:   3'- cuucCCGUGCGCCG----UCguACC-GCGUc -5'
28146 3' -60.2 NC_005887.1 + 1487 0.66 0.341136
Target:  5'- ---cGGCGUGCGGCGcucGCGcGGCGCGGc -3'
miRNA:   3'- cuucCCGUGCGCCGU---CGUaCCGCGUC- -5'
28146 3' -60.2 NC_005887.1 + 24299 0.66 0.332961
Target:  5'- ---cGGCACGUGGcCAGCA--GCGCAu -3'
miRNA:   3'- cuucCCGUGCGCC-GUCGUacCGCGUc -5'
28146 3' -60.2 NC_005887.1 + 30996 0.66 0.332961
Target:  5'- -cGGGGUGCGUcucucGcGUGGCGcGGCGCAGg -3'
miRNA:   3'- cuUCCCGUGCG-----C-CGUCGUaCCGCGUC- -5'
28146 3' -60.2 NC_005887.1 + 41596 0.66 0.332152
Target:  5'- -cAGcGGCGgcccaggUGCGGCGGCc-GGCGCGGc -3'
miRNA:   3'- cuUC-CCGU-------GCGCCGUCGuaCCGCGUC- -5'
28146 3' -60.2 NC_005887.1 + 23370 0.66 0.324931
Target:  5'- --uGGGC-CGCaGuGCGGCGUuguucuucGGCGCGGg -3'
miRNA:   3'- cuuCCCGuGCG-C-CGUCGUA--------CCGCGUC- -5'
28146 3' -60.2 NC_005887.1 + 29664 0.66 0.324931
Target:  5'- ---cGGCGCGaGGUAGCAcagcUGGCGCu- -3'
miRNA:   3'- cuucCCGUGCgCCGUCGU----ACCGCGuc -5'
28146 3' -60.2 NC_005887.1 + 27113 0.66 0.324931
Target:  5'- aGAAGu-CGgGCGGCAGCGU-GCGCGGu -3'
miRNA:   3'- -CUUCccGUgCGCCGUCGUAcCGCGUC- -5'
28146 3' -60.2 NC_005887.1 + 15046 0.67 0.317046
Target:  5'- ---cGGCcuGCGCGGCcuGCGcGGCGUAGg -3'
miRNA:   3'- cuucCCG--UGCGCCGu-CGUaCCGCGUC- -5'
28146 3' -60.2 NC_005887.1 + 13592 0.67 0.307013
Target:  5'- aGGAGGcCGCGUacuucaucgcugcuGGCAGCGcGGCGCGc -3'
miRNA:   3'- -CUUCCcGUGCG--------------CCGUCGUaCCGCGUc -5'
28146 3' -60.2 NC_005887.1 + 33742 0.67 0.30096
Target:  5'- cGAGGaucaGCGCGcCGGCcuucacgAGCAucUGGCGCGGc -3'
miRNA:   3'- cUUCC----CGUGC-GCCG-------UCGU--ACCGCGUC- -5'
28146 3' -60.2 NC_005887.1 + 14084 0.67 0.294261
Target:  5'- -cGGcGGCGCGcCGGCGGUugcggaGGCGCGc -3'
miRNA:   3'- cuUC-CCGUGC-GCCGUCGua----CCGCGUc -5'
28146 3' -60.2 NC_005887.1 + 27408 0.67 0.286954
Target:  5'- ----uGCGCGCcGCugcGCGUGGCGCAGu -3'
miRNA:   3'- cuuccCGUGCGcCGu--CGUACCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.