miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28146 3' -60.2 NC_005887.1 + 23536 0.66 0.363925
Target:  5'- cAAGGGCGuCGcCGGCuGCcgGGCuuccgguggaagcgGCGGg -3'
miRNA:   3'- cUUCCCGU-GC-GCCGuCGuaCCG--------------CGUC- -5'
28146 3' -60.2 NC_005887.1 + 27408 0.67 0.286954
Target:  5'- ----uGCGCGCcGCugcGCGUGGCGCAGu -3'
miRNA:   3'- cuuccCGUGCGcCGu--CGUACCGCGUC- -5'
28146 3' -60.2 NC_005887.1 + 27113 0.66 0.324931
Target:  5'- aGAAGu-CGgGCGGCAGCGU-GCGCGGu -3'
miRNA:   3'- -CUUCccGUgCGCCGUCGUAcCGCGUC- -5'
28146 3' -60.2 NC_005887.1 + 23370 0.66 0.324931
Target:  5'- --uGGGC-CGCaGuGCGGCGUuguucuucGGCGCGGg -3'
miRNA:   3'- cuuCCCGuGCG-C-CGUCGUA--------CCGCGUC- -5'
28146 3' -60.2 NC_005887.1 + 9912 0.66 0.341136
Target:  5'- ---cGGCGCGCGGCguucAGguUGGcCGCGc -3'
miRNA:   3'- cuucCCGUGCGCCG----UCguACC-GCGUc -5'
28146 3' -60.2 NC_005887.1 + 25082 0.66 0.349454
Target:  5'- ---cGGCugGcCGGCGGCcgccGGCGCGa -3'
miRNA:   3'- cuucCCGugC-GCCGUCGua--CCGCGUc -5'
28146 3' -60.2 NC_005887.1 + 31875 0.76 0.064746
Target:  5'- aGAAGGGCAugagguuggaUGCGGCGGCAgaccacUGGCucGCAGg -3'
miRNA:   3'- -CUUCCCGU----------GCGCCGUCGU------ACCG--CGUC- -5'
28146 3' -60.2 NC_005887.1 + 32855 0.7 0.178889
Target:  5'- uGAAGcGGCGCGCGccgauccugcGCAcgagccggcuGCAUGGCGCGc -3'
miRNA:   3'- -CUUC-CCGUGCGC----------CGU----------CGUACCGCGUc -5'
28146 3' -60.2 NC_005887.1 + 498 0.68 0.259158
Target:  5'- aGAGGGUucgaGCGCagcaacagcgGGCGGCGcGGCGCGu -3'
miRNA:   3'- cUUCCCG----UGCG----------CCGUCGUaCCGCGUc -5'
28146 3' -60.2 NC_005887.1 + 14084 0.67 0.294261
Target:  5'- -cGGcGGCGCGcCGGCGGUugcggaGGCGCGc -3'
miRNA:   3'- cuUC-CCGUGC-GCCGUCGua----CCGCGUc -5'
28146 3' -60.2 NC_005887.1 + 24299 0.66 0.332961
Target:  5'- ---cGGCACGUGGcCAGCA--GCGCAu -3'
miRNA:   3'- cuucCCGUGCGCC-GUCGUacCGCGUc -5'
28146 3' -60.2 NC_005887.1 + 35383 0.66 0.357916
Target:  5'- ---cGGCGCGCGGCAGU--GGagcgauGCAGa -3'
miRNA:   3'- cuucCCGUGCGCCGUCGuaCCg-----CGUC- -5'
28146 3' -60.2 NC_005887.1 + 39272 0.68 0.246103
Target:  5'- cGAAGGGCuugACGCuGCAGCAguUGGC-CGa -3'
miRNA:   3'- -CUUCCCG---UGCGcCGUCGU--ACCGcGUc -5'
28146 3' -60.2 NC_005887.1 + 600 0.66 0.357916
Target:  5'- cGgcGcGGCGCGCGGCGGCcgacGCGUucAGa -3'
miRNA:   3'- -CuuC-CCGUGCGCCGUCGuac-CGCG--UC- -5'
28146 3' -60.2 NC_005887.1 + 15046 0.67 0.317046
Target:  5'- ---cGGCcuGCGCGGCcuGCGcGGCGUAGg -3'
miRNA:   3'- cuucCCG--UGCGCCGu-CGUaCCGCGUC- -5'
28146 3' -60.2 NC_005887.1 + 22613 0.7 0.193468
Target:  5'- --cGGGCAugucgauCGCGGaCGGCAU-GCGCAGc -3'
miRNA:   3'- cuuCCCGU-------GCGCC-GUCGUAcCGCGUC- -5'
28146 3' -60.2 NC_005887.1 + 3772 0.66 0.357916
Target:  5'- cGGucGGCGCGCGGCucgacGGCGUGGUa--- -3'
miRNA:   3'- -CUucCCGUGCGCCG-----UCGUACCGcguc -5'
28146 3' -60.2 NC_005887.1 + 27720 0.67 0.279792
Target:  5'- --cGcGCGCGCGGCAGCucaGcGCGCAc -3'
miRNA:   3'- cuuCcCGUGCGCCGUCGua-C-CGCGUc -5'
28146 3' -60.2 NC_005887.1 + 8557 0.69 0.221632
Target:  5'- gGAGGGcGCAUGCcgaaGGCAGCAccGCaGCAGg -3'
miRNA:   3'- -CUUCC-CGUGCG----CCGUCGUacCG-CGUC- -5'
28146 3' -60.2 NC_005887.1 + 17380 0.69 0.219883
Target:  5'- cGAGGGCucgcuguugaacGCGCuggucgaucacgucGGCGGCAUGGCGaAGa -3'
miRNA:   3'- cUUCCCG------------UGCG--------------CCGUCGUACCGCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.