miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28148 3' -51.3 NC_005887.1 + 30994 0.72 0.476146
Target:  5'- cGC-CGAGCGCGCUG---UGCACAAg -3'
miRNA:   3'- uCGaGCUCGCGUGACuugAUGUGUUg -5'
28148 3' -51.3 NC_005887.1 + 15066 0.75 0.348104
Target:  5'- cAGCUCGGGCgGCACgccugcGGcCUGCGCGGCc -3'
miRNA:   3'- -UCGAGCUCG-CGUGa-----CUuGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 12796 0.76 0.274945
Target:  5'- cGGCgcgaUCGAGCGCAuuCUGcuGCUGCGCGACc -3'
miRNA:   3'- -UCG----AGCUCGCGU--GACu-UGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 15950 0.79 0.186262
Target:  5'- cGCgUCGAGCGCACcGAGCUGCugGuGCg -3'
miRNA:   3'- uCG-AGCUCGCGUGaCUUGAUGugU-UG- -5'
28148 3' -51.3 NC_005887.1 + 40631 0.8 0.161262
Target:  5'- uGCUCGAGCGCGCcgaGAACUcguGCGCGAg -3'
miRNA:   3'- uCGAGCUCGCGUGa--CUUGA---UGUGUUg -5'
28148 3' -51.3 NC_005887.1 + 27527 0.68 0.716215
Target:  5'- cAGCUCGAGauucCGCGCUcGAACguguggGC-CGGCa -3'
miRNA:   3'- -UCGAGCUC----GCGUGA-CUUGa-----UGuGUUG- -5'
28148 3' -51.3 NC_005887.1 + 11690 0.68 0.716215
Target:  5'- gAGCUCGGcauuGCGCACgcu-CUGCACcuGCg -3'
miRNA:   3'- -UCGAGCU----CGCGUGacuuGAUGUGu-UG- -5'
28148 3' -51.3 NC_005887.1 + 12402 0.67 0.749784
Target:  5'- uGGCcggCGAGCGacguacgcaguuCGCUGAGCUGCA--GCg -3'
miRNA:   3'- -UCGa--GCUCGC------------GUGACUUGAUGUguUG- -5'
28148 3' -51.3 NC_005887.1 + 30707 0.66 0.839921
Target:  5'- cGCUCGAGCGuCGCaucaacgauccgGAucugccggacgcGCUGCGCGAg -3'
miRNA:   3'- uCGAGCUCGC-GUGa-----------CU------------UGAUGUGUUg -5'
28148 3' -51.3 NC_005887.1 + 31289 0.66 0.832393
Target:  5'- uGUUCGAucGCGUcguGCUGAAgcACGCGGCg -3'
miRNA:   3'- uCGAGCU--CGCG---UGACUUgaUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 27648 0.66 0.826647
Target:  5'- cGCUCGAcggcGCGCucgcgcuguacuuccGCUGcguGCUGCACAc- -3'
miRNA:   3'- uCGAGCU----CGCG---------------UGACu--UGAUGUGUug -5'
28148 3' -51.3 NC_005887.1 + 13695 0.66 0.826647
Target:  5'- uGCUCGGcugagugcggccgccGCGCGCcGcGCUGCcaGCAGCg -3'
miRNA:   3'- uCGAGCU---------------CGCGUGaCuUGAUG--UGUUG- -5'
28148 3' -51.3 NC_005887.1 + 13434 0.66 0.819838
Target:  5'- cAGCgCGAGCGCcaucGCcGGgcucuuuuccuuccACUGCGCGGCg -3'
miRNA:   3'- -UCGaGCUCGCG----UGaCU--------------UGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 11609 0.66 0.81292
Target:  5'- cGCgCGcuGCGCGCcGAGCUGCugauCAGCu -3'
miRNA:   3'- uCGaGCu-CGCGUGaCUUGAUGu---GUUG- -5'
28148 3' -51.3 NC_005887.1 + 1464 0.66 0.81292
Target:  5'- cGCUgcCGAGCGgGCccaugaUGAACgaGCGCGACg -3'
miRNA:   3'- uCGA--GCUCGCgUG------ACUUGa-UGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 33812 0.66 0.802857
Target:  5'- uGCUCGugaaggccGGCGCGCUGAuccuCgcCGCGAUc -3'
miRNA:   3'- uCGAGC--------UCGCGUGACUu---GauGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 23475 0.67 0.792593
Target:  5'- gAGCugaUCGAcGCGCuGCUGcGGCUGC-CAGCg -3'
miRNA:   3'- -UCG---AGCU-CGCG-UGAC-UUGAUGuGUUG- -5'
28148 3' -51.3 NC_005887.1 + 32667 0.67 0.786343
Target:  5'- aAGCUCGugugcgggcugcacGUGCACUGGAacaUGCGCGucACg -3'
miRNA:   3'- -UCGAGCu-------------CGCGUGACUUg--AUGUGU--UG- -5'
28148 3' -51.3 NC_005887.1 + 9787 0.67 0.771512
Target:  5'- cAGCUgcCGGGCGUugaGCU--GCUGCACGAUc -3'
miRNA:   3'- -UCGA--GCUCGCG---UGAcuUGAUGUGUUG- -5'
28148 3' -51.3 NC_005887.1 + 16064 0.67 0.771512
Target:  5'- cGGCUCGcGGCGgGuCUGcGCgcGCACGACa -3'
miRNA:   3'- -UCGAGC-UCGCgU-GACuUGa-UGUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.