miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28149 5' -50.8 NC_005887.1 + 24502 0.66 0.877426
Target:  5'- uGCGugUCcuGCUcGCGAC--CUGCGUg -3'
miRNA:   3'- gUGCugAGu-UGAaCGCUGauGACGCA- -5'
28149 5' -50.8 NC_005887.1 + 37399 0.66 0.877426
Target:  5'- gGCGAC-CGAUgccagUGCcggcGCUGCUGCGa -3'
miRNA:   3'- gUGCUGaGUUGa----ACGc---UGAUGACGCa -5'
28149 5' -50.8 NC_005887.1 + 23487 0.66 0.874152
Target:  5'- gGCGGCUgCGACgagcugaucgacGCG-CUGCUGCGg -3'
miRNA:   3'- gUGCUGA-GUUGaa----------CGCuGAUGACGCa -5'
28149 5' -50.8 NC_005887.1 + 8048 0.66 0.869159
Target:  5'- gACGuGCUCGAC--GCGugU-CUGCGUg -3'
miRNA:   3'- gUGC-UGAGUUGaaCGCugAuGACGCA- -5'
28149 5' -50.8 NC_005887.1 + 30715 0.66 0.851808
Target:  5'- gCGCGAg-CAGCUUGUcGC-GCUGCGUg -3'
miRNA:   3'- -GUGCUgaGUUGAACGcUGaUGACGCA- -5'
28149 5' -50.8 NC_005887.1 + 32442 0.66 0.851808
Target:  5'- gGCGGCgaUCAGgUUGCGcagccACUGCgcgGCGUg -3'
miRNA:   3'- gUGCUG--AGUUgAACGC-----UGAUGa--CGCA- -5'
28149 5' -50.8 NC_005887.1 + 36652 0.66 0.851807
Target:  5'- gCGCGGCgUCAucuauGCaUGC-ACUACUGCGa -3'
miRNA:   3'- -GUGCUG-AGU-----UGaACGcUGAUGACGCa -5'
28149 5' -50.8 NC_005887.1 + 18446 0.67 0.833431
Target:  5'- gCGCGAuCUCGACgcagGCGAagaacCUGCUcGCGg -3'
miRNA:   3'- -GUGCU-GAGUUGaa--CGCU-----GAUGA-CGCa -5'
28149 5' -50.8 NC_005887.1 + 25738 0.67 0.83343
Target:  5'- cCACuGAC-CGACgaugGCGACgcGCUGCGg -3'
miRNA:   3'- -GUG-CUGaGUUGaa--CGCUGa-UGACGCa -5'
28149 5' -50.8 NC_005887.1 + 8172 0.67 0.823883
Target:  5'- gGCGcCUCGGCgagcGCGGCgaGCUGCGc -3'
miRNA:   3'- gUGCuGAGUUGaa--CGCUGa-UGACGCa -5'
28149 5' -50.8 NC_005887.1 + 29772 0.67 0.823883
Target:  5'- uGCGACgcgaCGGCgaGUGGCUGC-GCGUg -3'
miRNA:   3'- gUGCUGa---GUUGaaCGCUGAUGaCGCA- -5'
28149 5' -50.8 NC_005887.1 + 21272 0.67 0.81411
Target:  5'- cCGCGGCggCGGCguaUGCG-CUGCUGgCGUc -3'
miRNA:   3'- -GUGCUGa-GUUGa--ACGCuGAUGAC-GCA- -5'
28149 5' -50.8 NC_005887.1 + 39017 0.68 0.783564
Target:  5'- cCGCGcAgUCGACg-GCGGCUuGCUGCGg -3'
miRNA:   3'- -GUGC-UgAGUUGaaCGCUGA-UGACGCa -5'
28149 5' -50.8 NC_005887.1 + 7603 0.68 0.773014
Target:  5'- aGCGGCgccgguugaUCGAUgggcgGCGACUGCUGCc- -3'
miRNA:   3'- gUGCUG---------AGUUGaa---CGCUGAUGACGca -5'
28149 5' -50.8 NC_005887.1 + 23964 0.68 0.762301
Target:  5'- cCGCGACUCAGCcugGUGGCUugaUGCc- -3'
miRNA:   3'- -GUGCUGAGUUGaa-CGCUGAug-ACGca -5'
28149 5' -50.8 NC_005887.1 + 34273 0.69 0.729326
Target:  5'- uCGCGGCUUGcgcaugccgucGCcgUGCGGCUgACUGCGg -3'
miRNA:   3'- -GUGCUGAGU-----------UGa-ACGCUGA-UGACGCa -5'
28149 5' -50.8 NC_005887.1 + 24321 0.69 0.695374
Target:  5'- gGCGACUCGcc--GUGGCUGCUGCc- -3'
miRNA:   3'- gUGCUGAGUugaaCGCUGAUGACGca -5'
28149 5' -50.8 NC_005887.1 + 28472 0.69 0.683903
Target:  5'- gCGCGcGCUCGGC-UGCGACgUGC-GCGUg -3'
miRNA:   3'- -GUGC-UGAGUUGaACGCUG-AUGaCGCA- -5'
28149 5' -50.8 NC_005887.1 + 16041 0.7 0.672377
Target:  5'- gCACGACauccUCGACgaacUGCGACaGCgGCGUg -3'
miRNA:   3'- -GUGCUG----AGUUGa---ACGCUGaUGaCGCA- -5'
28149 5' -50.8 NC_005887.1 + 21353 1.08 0.002507
Target:  5'- aCACGACUCAACUUGCGACUACUGCGUu -3'
miRNA:   3'- -GUGCUGAGUUGAACGCUGAUGACGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.