miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2815 3' -57.4 NC_001491.2 + 11928 0.66 0.841819
Target:  5'- -cGGGAuaUCGCGGC-GUCGUGaaAGCGg -3'
miRNA:   3'- gaCUCU--AGCGCCGuCGGCAUggUCGU- -5'
2815 3' -57.4 NC_001491.2 + 42101 0.66 0.841819
Target:  5'- gUGAGGgcggcuuccCGCaGCGGCUaUACCGGCAa -3'
miRNA:   3'- gACUCUa--------GCGcCGUCGGcAUGGUCGU- -5'
2815 3' -57.4 NC_001491.2 + 147992 0.66 0.841008
Target:  5'- gUGAGGaUGCGGUuccccagGGCC--GCCAGCAg -3'
miRNA:   3'- gACUCUaGCGCCG-------UCGGcaUGGUCGU- -5'
2815 3' -57.4 NC_001491.2 + 63887 0.66 0.833625
Target:  5'- cCUGAGAgCGUGG-AGCUgGUugCGGCGc -3'
miRNA:   3'- -GACUCUaGCGCCgUCGG-CAugGUCGU- -5'
2815 3' -57.4 NC_001491.2 + 17212 0.66 0.833625
Target:  5'- cCUGGacUCGCGGagugGGcCCGcGCCAGCAa -3'
miRNA:   3'- -GACUcuAGCGCCg---UC-GGCaUGGUCGU- -5'
2815 3' -57.4 NC_001491.2 + 130120 0.66 0.833625
Target:  5'- gCUGuGGUUGCcuccgaaggGGUGGUCGUAUCAGUAg -3'
miRNA:   3'- -GACuCUAGCG---------CCGUCGGCAUGGUCGU- -5'
2815 3' -57.4 NC_001491.2 + 67071 0.66 0.825248
Target:  5'- -aGGGAaaccgUCGCGGCAGCgCuucccCCGGCAu -3'
miRNA:   3'- gaCUCU-----AGCGCCGUCG-Gcau--GGUCGU- -5'
2815 3' -57.4 NC_001491.2 + 137704 0.68 0.723407
Target:  5'- -cGGcGUCGCGGCggcGGCCGUggACCgAGCGg -3'
miRNA:   3'- gaCUcUAGCGCCG---UCGGCA--UGG-UCGU- -5'
2815 3' -57.4 NC_001491.2 + 79853 0.68 0.713498
Target:  5'- -aGaAGGUCGCGGUagauAGCCGUGCacuccucuGGCAg -3'
miRNA:   3'- gaC-UCUAGCGCCG----UCGGCAUGg-------UCGU- -5'
2815 3' -57.4 NC_001491.2 + 75520 0.68 0.703519
Target:  5'- uCUGGGAUU-CGGCgAGUCGcgugGCCAGCGg -3'
miRNA:   3'- -GACUCUAGcGCCG-UCGGCa---UGGUCGU- -5'
2815 3' -57.4 NC_001491.2 + 66861 0.69 0.652903
Target:  5'- uCUGAGcaggaGCGGCuGCUGUACCucgugAGCAa -3'
miRNA:   3'- -GACUCuag--CGCCGuCGGCAUGG-----UCGU- -5'
2815 3' -57.4 NC_001491.2 + 5422 0.71 0.561387
Target:  5'- -gGGGAUagacucaaCGCGGCGGCC--GCCAGCu -3'
miRNA:   3'- gaCUCUA--------GCGCCGUCGGcaUGGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.