miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2815 5' -58.7 NC_001491.2 + 1537 0.71 0.440222
Target:  5'- --aGCgauGCGCGGC-GCCCCcauugGGCGGCg -3'
miRNA:   3'- aaaCGau-CGCGUCGuCGGGG-----CCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 6559 0.66 0.731698
Target:  5'- -cUGCgAGCaCAGCGccGCCCUGGCGc- -3'
miRNA:   3'- aaACGaUCGcGUCGU--CGGGGCCGUug -5'
2815 5' -58.7 NC_001491.2 + 42093 0.7 0.497071
Target:  5'- --gGCUuccCGCAGCGGCUauaCCGGCAAUu -3'
miRNA:   3'- aaaCGAuc-GCGUCGUCGG---GGCCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 60893 0.66 0.711603
Target:  5'- --cGCUGuucGCGCAcGCAGCgCCCcaaacuGGCGAUg -3'
miRNA:   3'- aaaCGAU---CGCGU-CGUCG-GGG------CCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 64731 0.66 0.711603
Target:  5'- --gGCUGGgGaaaccGCGGCCUCGGCGuggGCa -3'
miRNA:   3'- aaaCGAUCgCgu---CGUCGGGGCCGU---UG- -5'
2815 5' -58.7 NC_001491.2 + 65491 0.66 0.731698
Target:  5'- -gUGUUGGCGCcacaggugccAGCcggggaAGCCCCgGGCAGu -3'
miRNA:   3'- aaACGAUCGCG----------UCG------UCGGGG-CCGUUg -5'
2815 5' -58.7 NC_001491.2 + 68777 0.66 0.69123
Target:  5'- gUUGCcaaaGUAGCugauGCCCUGGCGGCc -3'
miRNA:   3'- aAACGaucgCGUCGu---CGGGGCCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 81121 0.71 0.422105
Target:  5'- -gUGCgUAGUGCGGCGGCUgCguaGGCGGCg -3'
miRNA:   3'- aaACG-AUCGCGUCGUCGGgG---CCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 86512 0.68 0.587749
Target:  5'- -aUGUacGCGUAGCAcucCCCCGGCAGg -3'
miRNA:   3'- aaACGauCGCGUCGUc--GGGGCCGUUg -5'
2815 5' -58.7 NC_001491.2 + 91042 0.69 0.516754
Target:  5'- --cGC-GGUGguG-AGCCCCGGCGAUa -3'
miRNA:   3'- aaaCGaUCGCguCgUCGGGGCCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 91943 0.67 0.629185
Target:  5'- --aGuCUGGgGUGGCAGCCUCagagcgGGCGACa -3'
miRNA:   3'- aaaC-GAUCgCGUCGUCGGGG------CCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 94268 0.68 0.598077
Target:  5'- --aGCUGGUGgAGUAGCCCCGa---- -3'
miRNA:   3'- aaaCGAUCGCgUCGUCGGGGCcguug -5'
2815 5' -58.7 NC_001491.2 + 101564 0.67 0.627108
Target:  5'- -gUGuCUGGUGUuguGGCAGCCaauauggaaggaCGGCAGCg -3'
miRNA:   3'- aaAC-GAUCGCG---UCGUCGGg-----------GCCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 106054 0.68 0.587749
Target:  5'- --aGCgcG-GCGGCAGCCgCGGCGAg -3'
miRNA:   3'- aaaCGauCgCGUCGUCGGgGCCGUUg -5'
2815 5' -58.7 NC_001491.2 + 114291 0.67 0.63957
Target:  5'- --aGCUGGUGguugagcacccCGGCccgAGCCCCGGCGu- -3'
miRNA:   3'- aaaCGAUCGC-----------GUCG---UCGGGGCCGUug -5'
2815 5' -58.7 NC_001491.2 + 114946 0.66 0.701446
Target:  5'- -cUGCgccGUGC-GCuGGCCCCGGgAGCg -3'
miRNA:   3'- aaACGau-CGCGuCG-UCGGGGCCgUUG- -5'
2815 5' -58.7 NC_001491.2 + 115476 0.66 0.69123
Target:  5'- --gGCccGCuGCAGCGGCCCCccGGCccggGACg -3'
miRNA:   3'- aaaCGauCG-CGUCGUCGGGG--CCG----UUG- -5'
2815 5' -58.7 NC_001491.2 + 116228 0.66 0.732694
Target:  5'- -cUGCUGGCcCcaccgacucggucccAGCAGCccucaucguccucgCCCGGCGGCg -3'
miRNA:   3'- aaACGAUCGcG---------------UCGUCG--------------GGGCCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 117454 0.78 0.166694
Target:  5'- --gGC-AGCaGCAGCaucGGCCCCGGCGGCg -3'
miRNA:   3'- aaaCGaUCG-CGUCG---UCGGGGCCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 118362 0.71 0.413216
Target:  5'- --cGCcGGCaGCGGCGGuccuccuaCCCCGGCGGCu -3'
miRNA:   3'- aaaCGaUCG-CGUCGUC--------GGGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.