miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2815 5' -58.7 NC_001491.2 + 94268 0.68 0.598077
Target:  5'- --aGCUGGUGgAGUAGCCCCGa---- -3'
miRNA:   3'- aaaCGAUCGCgUCGUCGGGGCcguug -5'
2815 5' -58.7 NC_001491.2 + 86512 0.68 0.587749
Target:  5'- -aUGUacGCGUAGCAcucCCCCGGCAGg -3'
miRNA:   3'- aaACGauCGCGUCGUc--GGGGCCGUUg -5'
2815 5' -58.7 NC_001491.2 + 123349 0.68 0.587749
Target:  5'- -cUGCgGGCGCgAGCAggcgaacgcguGUCCCaGGCAGCa -3'
miRNA:   3'- aaACGaUCGCG-UCGU-----------CGGGG-CCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 106054 0.68 0.587749
Target:  5'- --aGCgcG-GCGGCAGCCgCGGCGAg -3'
miRNA:   3'- aaaCGauCgCGUCGUCGGgGCCGUUg -5'
2815 5' -58.7 NC_001491.2 + 136964 0.68 0.577454
Target:  5'- --aGgUAGCgGCAGCAGCCaCCGccucuGCGGCu -3'
miRNA:   3'- aaaCgAUCG-CGUCGUCGG-GGC-----CGUUG- -5'
2815 5' -58.7 NC_001491.2 + 147215 0.69 0.546837
Target:  5'- --aGCgGGCGUuugucuGGguGgCCCGGCAGCa -3'
miRNA:   3'- aaaCGaUCGCG------UCguCgGGGCCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 91042 0.69 0.516754
Target:  5'- --cGC-GGUGguG-AGCCCCGGCGAUa -3'
miRNA:   3'- aaaCGaUCGCguCgUCGGGGCCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 118616 0.69 0.515762
Target:  5'- --aGCcAGCGCAGCGacuucGCCCCGGaccucuaCGACu -3'
miRNA:   3'- aaaCGaUCGCGUCGU-----CGGGGCC-------GUUG- -5'
2815 5' -58.7 NC_001491.2 + 42093 0.7 0.497071
Target:  5'- --gGCUuccCGCAGCGGCUauaCCGGCAAUu -3'
miRNA:   3'- aaaCGAuc-GCGUCGUCGG---GGCCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 144878 0.7 0.487357
Target:  5'- --gGCUGG-GCGGCAGCCgCCGGgGu- -3'
miRNA:   3'- aaaCGAUCgCGUCGUCGG-GGCCgUug -5'
2815 5' -58.7 NC_001491.2 + 145752 0.7 0.477733
Target:  5'- -cUGCUGcUGCcGCcGCCCCGGUAGCc -3'
miRNA:   3'- aaACGAUcGCGuCGuCGGGGCCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 145362 0.7 0.468204
Target:  5'- --aGCUcuucGGgGUGGCGGCCCCaGCGGCc -3'
miRNA:   3'- aaaCGA----UCgCGUCGUCGGGGcCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 1537 0.71 0.440222
Target:  5'- --aGCgauGCGCGGC-GCCCCcauugGGCGGCg -3'
miRNA:   3'- aaaCGau-CGCGUCGuCGGGG-----CCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 81121 0.71 0.422105
Target:  5'- -gUGCgUAGUGCGGCGGCUgCguaGGCGGCg -3'
miRNA:   3'- aaACG-AUCGCGUCGUCGGgG---CCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 146405 0.71 0.413216
Target:  5'- gUUGCUGGCuggccgcggcaGCGGCGGCCUgGGCc-- -3'
miRNA:   3'- aAACGAUCG-----------CGUCGUCGGGgCCGuug -5'
2815 5' -58.7 NC_001491.2 + 118362 0.71 0.413216
Target:  5'- --cGCcGGCaGCGGCGGuccuccuaCCCCGGCGGCu -3'
miRNA:   3'- aaaCGaUCG-CGUCGUC--------GGGGCCGUUG- -5'
2815 5' -58.7 NC_001491.2 + 117454 0.78 0.166694
Target:  5'- --gGC-AGCaGCAGCaucGGCCCCGGCGGCg -3'
miRNA:   3'- aaaCGaUCG-CGUCG---UCGGGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.