Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28150 | 5' | -56.9 | NC_005887.1 | + | 34941 | 0.73 | 0.222955 |
Target: 5'- cCGuCGCCGGCUucGAaCUcGGCGGGCGUGc -3' miRNA: 3'- -GCuGCGGCUGG--UUaGA-CUGCCCGCAC- -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 14806 | 0.73 | 0.228876 |
Target: 5'- gGAC-CCGAUCAAUCUGGCGGccGCGa- -3' miRNA: 3'- gCUGcGGCUGGUUAGACUGCC--CGCac -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 14097 | 0.72 | 0.253899 |
Target: 5'- uGuACGCCGACCAGaccgccagcuuUCUGAgCGGGCa-- -3' miRNA: 3'- gC-UGCGGCUGGUU-----------AGACU-GCCCGcac -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 5772 | 0.72 | 0.267232 |
Target: 5'- aGGCGCUGGCCGcgaaGugGGGUGUGu -3' miRNA: 3'- gCUGCGGCUGGUuagaCugCCCGCAC- -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 9772 | 0.7 | 0.350716 |
Target: 5'- cCGACaGCCuGCUGAUCggcaUGACGGGCGaUGa -3' miRNA: 3'- -GCUG-CGGcUGGUUAG----ACUGCCCGC-AC- -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 15386 | 0.7 | 0.350716 |
Target: 5'- uCGACGCCGcGCUGAUCgcgcGCGGGCa-- -3' miRNA: 3'- -GCUGCGGC-UGGUUAGac--UGCCCGcac -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 15510 | 0.71 | 0.326228 |
Target: 5'- gGACGCCGGCCAGUUuccgGACGucGCGa- -3' miRNA: 3'- gCUGCGGCUGGUUAGa---CUGCc-CGCac -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 38509 | 0.71 | 0.318352 |
Target: 5'- uCGugGCgGGuaUCGGUCUGGCGGGUaggGUGg -3' miRNA: 3'- -GCugCGgCU--GGUUAGACUGCCCG---CAC- -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 2184 | 0.71 | 0.313696 |
Target: 5'- uGACGCCGGCCGcggugAUCgggcagcgcaaaccGAUGGGCGg- -3' miRNA: 3'- gCUGCGGCUGGU-----UAGa-------------CUGCCCGCac -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 30204 | 0.69 | 0.390736 |
Target: 5'- uCGGCGCCGACUuGUacaagcuugcauaUGcACGGGCGUu -3' miRNA: 3'- -GCUGCGGCUGGuUAg------------AC-UGCCCGCAc -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 34689 | 0.68 | 0.461028 |
Target: 5'- uCGACGCgaaCGGCgAAUggCUGGCGGGCa-- -3' miRNA: 3'- -GCUGCG---GCUGgUUA--GACUGCCCGcac -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 28768 | 0.68 | 0.461028 |
Target: 5'- uCGACGacuaCGA-CGAUUUcGCGGGCGUGa -3' miRNA: 3'- -GCUGCg---GCUgGUUAGAcUGCCCGCAC- -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 21640 | 0.68 | 0.461028 |
Target: 5'- aCGAUGCCGG-CAGUaCUGGauGGCGUa -3' miRNA: 3'- -GCUGCGGCUgGUUA-GACUgcCCGCAc -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 930 | 0.68 | 0.471035 |
Target: 5'- gCGGCGCgGGCCAcgCguccACGGGCa-- -3' miRNA: 3'- -GCUGCGgCUGGUuaGac--UGCCCGcac -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 27027 | 0.67 | 0.533197 |
Target: 5'- cCGuCGCCGaacgGCCugcagGAUCUGugGGGCcagcaGUGg -3' miRNA: 3'- -GCuGCGGC----UGG-----UUAGACugCCCG-----CAC- -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 17693 | 0.66 | 0.548141 |
Target: 5'- aCGGCGCUGACCGucgugcgcagcGUuuccaucuugCgcgcgagcgcgggauUGACGGGCGUGu -3' miRNA: 3'- -GCUGCGGCUGGU-----------UA----------G---------------ACUGCCCGCAC- -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 5107 | 0.66 | 0.563214 |
Target: 5'- gCGGCcauuGCCGugCcuucguuggcuucGGUCUGcgccucgGCGGGCGUGa -3' miRNA: 3'- -GCUG----CGGCugG-------------UUAGAC-------UGCCCGCAC- -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 31356 | 0.66 | 0.565377 |
Target: 5'- cCGAUGCCGGUCGAgCUcGACGaGGCGa- -3' miRNA: 3'- -GCUGCGGCUGGUUaGA-CUGC-CCGCac -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 12214 | 0.66 | 0.587112 |
Target: 5'- gCGAuCGUC-ACCAAUCUGGCGcGCGa- -3' miRNA: 3'- -GCU-GCGGcUGGUUAGACUGCcCGCac -5' |
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28150 | 5' | -56.9 | NC_005887.1 | + | 8934 | 0.69 | 0.376482 |
Target: 5'- aCGGCGUCG--CGAUCUcGACGGGCGc- -3' miRNA: 3'- -GCUGCGGCugGUUAGA-CUGCCCGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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