Results 41 - 60 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28151 | 5' | -51.3 | NC_005887.1 | + | 23482 | 0.72 | 0.52971 |
Target: 5'- -cUGCG-ACGAGCugaucGACGCgcuGCUGCGGCu -3' miRNA: 3'- cuACGCuUGUUUG-----UUGCG---UGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 401 | 0.72 | 0.48701 |
Target: 5'- cAUGCGAcggcucGCGcACuuccucgguguacgcGCGCACCGCGGCc -3' miRNA: 3'- cUACGCU------UGUuUGu--------------UGCGUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 22188 | 0.72 | 0.51862 |
Target: 5'- --cGCGAucaGCGAGCcaauCGCACC-CGGCa -3' miRNA: 3'- cuaCGCU---UGUUUGuu--GCGUGGcGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 35650 | 0.72 | 0.48272 |
Target: 5'- cGGUGCGAgcucgacgcugucgACAuacAGCAGCGCGCgaucgGCGGCc -3' miRNA: 3'- -CUACGCU--------------UGU---UUGUUGCGUGg----CGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 41014 | 0.72 | 0.495642 |
Target: 5'- cGUGUGGACAGGCGucuacugGCGC-CgCGCGGUg -3' miRNA: 3'- cUACGCUUGUUUGU-------UGCGuG-GCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 27219 | 0.72 | 0.496726 |
Target: 5'- uGAU-CGA--GAACAcggGCGCAUCGCGGCg -3' miRNA: 3'- -CUAcGCUugUUUGU---UGCGUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 30465 | 0.72 | 0.51862 |
Target: 5'- --gGCugGAACAGGCggUGCGCgaCGCGGCc -3' miRNA: 3'- cuaCG--CUUGUUUGuuGCGUG--GCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 15801 | 0.72 | 0.51862 |
Target: 5'- cGAUGCGGcagucacugaccACGAggcgcagguGCAGCGcUugCGCGGCg -3' miRNA: 3'- -CUACGCU------------UGUU---------UGUUGC-GugGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 33370 | 0.72 | 0.52971 |
Target: 5'- --aGCGGAUguGC-ACGCGCCggcGCGGCa -3' miRNA: 3'- cuaCGCUUGuuUGuUGCGUGG---CGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 33187 | 0.72 | 0.52971 |
Target: 5'- aGcgGcCGGACGAGCccguccagaugAACGCGCCGCacuGGCa -3' miRNA: 3'- -CuaC-GCUUGUUUG-----------UUGCGUGGCG---CCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 18393 | 0.72 | 0.507623 |
Target: 5'- --cGCGAACccGAUGGCcuaCGCCGCGGCg -3' miRNA: 3'- cuaCGCUUGu-UUGUUGc--GUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 3016 | 0.72 | 0.51862 |
Target: 5'- --gGCGAGgAuggucGCGGCgGUGCCGCGGCg -3' miRNA: 3'- cuaCGCUUgUu----UGUUG-CGUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 17185 | 0.71 | 0.540886 |
Target: 5'- --cGCGAAC--GCGGC-CGCaCGCGGCa -3' miRNA: 3'- cuaCGCUUGuuUGUUGcGUG-GCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 4286 | 0.71 | 0.574848 |
Target: 5'- --cGCGAGCAGcACGccuuucuccugcGCGCGCUGCaGCa -3' miRNA: 3'- cuaCGCUUGUU-UGU------------UGCGUGGCGcCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 30289 | 0.71 | 0.574848 |
Target: 5'- -cUGuCGAACAucgaaggccGCGACGCGgCGUGGCu -3' miRNA: 3'- cuAC-GCUUGUu--------UGUUGCGUgGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 11797 | 0.71 | 0.574848 |
Target: 5'- -uUGCGuGCAuuCGuGCGCGCCGUGcGCg -3' miRNA: 3'- cuACGCuUGUuuGU-UGCGUGGCGC-CG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 11480 | 0.71 | 0.586285 |
Target: 5'- -uUGCGcuCAGACGAUGC-CUugGCGGCg -3' miRNA: 3'- cuACGCuuGUUUGUUGCGuGG--CGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 5514 | 0.71 | 0.573707 |
Target: 5'- gGAUGCGGcaggagugccaGCGGGCGcguggucGCGCcggucGCUGCGGCg -3' miRNA: 3'- -CUACGCU-----------UGUUUGU-------UGCG-----UGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 14464 | 0.71 | 0.540886 |
Target: 5'- cGUGuCGGACAGgucguACGcgcGCGCGCCgaGCGGCg -3' miRNA: 3'- cUAC-GCUUGUU-----UGU---UGCGUGG--CGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 22952 | 0.71 | 0.540886 |
Target: 5'- --cGCGGACcGAU-ACGCuCUGCGGCa -3' miRNA: 3'- cuaCGCUUGuUUGuUGCGuGGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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