miRNA display CGI


Results 61 - 80 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 11376 0.68 0.75663
Target:  5'- --cGCGGGCGu-CAGCGCAgCCggagcgcugGCGGCc -3'
miRNA:   3'- cuaCGCUUGUuuGUUGCGU-GG---------CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 11480 0.71 0.586285
Target:  5'- -uUGCGcuCAGACGAUGC-CUugGCGGCg -3'
miRNA:   3'- cuACGCuuGUUUGUUGCGuGG--CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 11549 0.69 0.666932
Target:  5'- --aGCucGGCGcGCAGCGCGCgGCGGUc -3'
miRNA:   3'- cuaCGc-UUGUuUGUUGCGUGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 11797 0.71 0.574848
Target:  5'- -uUGCGuGCAuuCGuGCGCGCCGUGcGCg -3'
miRNA:   3'- cuACGCuUGUuuGU-UGCGUGGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 12146 0.68 0.744676
Target:  5'- cGGUGaccuGAcCGAGCGACGUGCCgaccugcugcagcGCGGCg -3'
miRNA:   3'- -CUACg---CUuGUUUGUUGCGUGG-------------CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 12199 0.7 0.63235
Target:  5'- --cGCGAAgGAcaGCGcCGCGCCG-GGCg -3'
miRNA:   3'- cuaCGCUUgUU--UGUuGCGUGGCgCCG- -5'
28151 5' -51.3 NC_005887.1 + 12280 0.68 0.745769
Target:  5'- --cGUGAAauc-CGGCGCGCCcggcGCGGCg -3'
miRNA:   3'- cuaCGCUUguuuGUUGCGUGG----CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 12414 0.73 0.433781
Target:  5'- --aGCa---GGGCAACGaCACCGCGGCg -3'
miRNA:   3'- cuaCGcuugUUUGUUGC-GUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 12636 0.67 0.777919
Target:  5'- --gGCGGACAccauGCGCauGCCgGCGGCc -3'
miRNA:   3'- cuaCGCUUGUuuguUGCG--UGG-CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 12759 0.66 0.837403
Target:  5'- cGUGCGcGCGugacccuGCAACGCGauaagcuucguCgGCGGCa -3'
miRNA:   3'- cUACGCuUGUu------UGUUGCGU-----------GgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 12958 0.67 0.805588
Target:  5'- --cGCGAcgcuACAgcaauccagaccgaAGCGGCGaC-CCGCGGCa -3'
miRNA:   3'- cuaCGCU----UGU--------------UUGUUGC-GuGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 13171 0.67 0.808576
Target:  5'- --cGCGcGCAGACAGCGgGa-GCGGUc -3'
miRNA:   3'- cuaCGCuUGUUUGUUGCgUggCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 13214 0.66 0.828017
Target:  5'- --cGCGcGGCAAGCGACGagacgagGCC-CGGCa -3'
miRNA:   3'- cuaCGC-UUGUUUGUUGCg------UGGcGCCG- -5'
28151 5' -51.3 NC_005887.1 + 13426 0.75 0.348722
Target:  5'- -cUGCuGAcgACGAGCGGCGCACCGCucaGCa -3'
miRNA:   3'- cuACG-CU--UGUUUGUUGCGUGGCGc--CG- -5'
28151 5' -51.3 NC_005887.1 + 13546 0.69 0.712478
Target:  5'- aAUGCGAuc-GGCGAUGCGCUGCcGCc -3'
miRNA:   3'- cUACGCUuguUUGUUGCGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 13613 0.76 0.323138
Target:  5'- -cUGCuGGCAGcGCGGCGCGCgGCGGCc -3'
miRNA:   3'- cuACGcUUGUU-UGUUGCGUGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 13899 0.68 0.734781
Target:  5'- cGUGCGcgucGGCAuuCGugGCACguaCGCGGUg -3'
miRNA:   3'- cUACGC----UUGUuuGUugCGUG---GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 14013 0.7 0.620807
Target:  5'- --cGCGccuccGCAAccgcCGGCGCGCCGcCGGCg -3'
miRNA:   3'- cuaCGCu----UGUUu---GUUGCGUGGC-GCCG- -5'
28151 5' -51.3 NC_005887.1 + 14090 0.7 0.643893
Target:  5'- -cUGCGcc--GGCGGCGCGCCgGCGGUu -3'
miRNA:   3'- cuACGCuuguUUGUUGCGUGG-CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 14293 0.67 0.777919
Target:  5'- gGAUGCcgcgcCGAACAGCGCGgCGCcGCc -3'
miRNA:   3'- -CUACGcuu--GUUUGUUGCGUgGCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.