miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 32835 0.69 0.700057
Target:  5'- -cUGCGcACGAgccggcuGCAugGCGCgCGcCGGCg -3'
miRNA:   3'- cuACGCuUGUU-------UGUugCGUG-GC-GCCG- -5'
28151 5' -51.3 NC_005887.1 + 32442 0.66 0.855453
Target:  5'- gGcgGCGAuCAGguugcGCAGCcaCugCGCGGCg -3'
miRNA:   3'- -CuaCGCUuGUU-----UGUUGc-GugGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 32394 0.7 0.620807
Target:  5'- --cGCcGGCAucGGCGugugguccuACGCACUGCGGCg -3'
miRNA:   3'- cuaCGcUUGU--UUGU---------UGCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 32291 0.67 0.788321
Target:  5'- cGggGCGAucguCGGGCcagccGGCGCGCCGCaGUg -3'
miRNA:   3'- -CuaCGCUu---GUUUG-----UUGCGUGGCGcCG- -5'
28151 5' -51.3 NC_005887.1 + 31586 0.7 0.63235
Target:  5'- --gGCGAAgcGACAAcugcguucaucCGCGCCGCGcGCg -3'
miRNA:   3'- cuaCGCUUguUUGUU-----------GCGUGGCGC-CG- -5'
28151 5' -51.3 NC_005887.1 + 31393 0.66 0.864097
Target:  5'- --gGCGuAGCGGu--GCGUGCCGUGGUu -3'
miRNA:   3'- cuaCGC-UUGUUuguUGCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 31355 0.67 0.788321
Target:  5'- cGAUGCcggucGAGCucGACGAgGCGaucgaCGCGGCc -3'
miRNA:   3'- -CUACG-----CUUGu-UUGUUgCGUg----GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 31082 0.68 0.75663
Target:  5'- -cUGCGAAUAGugGccUGCGCCGCGccacGCg -3'
miRNA:   3'- cuACGCUUGUUugUu-GCGUGGCGC----CG- -5'
28151 5' -51.3 NC_005887.1 + 31017 0.69 0.655424
Target:  5'- --cGCGGcGCAGGCcacuauuCGCagGCCGCGGCu -3'
miRNA:   3'- cuaCGCU-UGUUUGuu-----GCG--UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30901 0.66 0.854574
Target:  5'- cAUGCGcGGCAugcagAugGACGUcgaacuggccgagGCCGCGGUg -3'
miRNA:   3'- cUACGC-UUGU-----UugUUGCG-------------UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30799 0.82 0.125647
Target:  5'- --cGCGAuCAAugGcGCGCACCGCGGCc -3'
miRNA:   3'- cuaCGCUuGUUugU-UGCGUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30711 0.73 0.432771
Target:  5'- aGGUGC--GCGAGCAgcuugucGCGCugCGUGGCc -3'
miRNA:   3'- -CUACGcuUGUUUGU-------UGCGugGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30608 0.73 0.454263
Target:  5'- --cGCGAGCAAcucgcGCAGCGCGUC-CGGCa -3'
miRNA:   3'- cuaCGCUUGUU-----UGUUGCGUGGcGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30550 0.7 0.609274
Target:  5'- cGGUGCGcAACGcACGggccgcgucGCGCACCGCcuguuccagcccGGCa -3'
miRNA:   3'- -CUACGC-UUGUuUGU---------UGCGUGGCG------------CCG- -5'
28151 5' -51.3 NC_005887.1 + 30465 0.72 0.51862
Target:  5'- --gGCugGAACAGGCggUGCGCgaCGCGGCc -3'
miRNA:   3'- cuaCG--CUUGUUUGuuGCGUG--GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30364 0.7 0.609274
Target:  5'- cGAUGcCGAGCu--CggUGUACCGCucGGCg -3'
miRNA:   3'- -CUAC-GCUUGuuuGuuGCGUGGCG--CCG- -5'
28151 5' -51.3 NC_005887.1 + 30351 0.68 0.734781
Target:  5'- -cUGCGAACGucgugcgcGGCAcgaucguCGCGCCGgaCGGCa -3'
miRNA:   3'- cuACGCUUGU--------UUGUu------GCGUGGC--GCCG- -5'
28151 5' -51.3 NC_005887.1 + 30289 0.71 0.574848
Target:  5'- -cUGuCGAACAucgaaggccGCGACGCGgCGUGGCu -3'
miRNA:   3'- cuAC-GCUUGUu--------UGUUGCGUgGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30017 0.67 0.812532
Target:  5'- --cGUGAACGuGACgAACGCGCCGacgccacccucauaGGCg -3'
miRNA:   3'- cuaCGCUUGU-UUG-UUGCGUGGCg-------------CCG- -5'
28151 5' -51.3 NC_005887.1 + 29808 0.69 0.666932
Target:  5'- --cGcCGGGCaAGACcgUGCACgCGCGGCg -3'
miRNA:   3'- cuaC-GCUUG-UUUGuuGCGUG-GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.