Results 41 - 60 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28151 | 5' | -51.3 | NC_005887.1 | + | 2915 | 0.78 | 0.250811 |
Target: 5'- --cGCGAACGAcgccgccgccaagcuGCGcaaGCGCCGCGGCa -3' miRNA: 3'- cuaCGCUUGUU---------------UGUug-CGUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 17298 | 0.78 | 0.241453 |
Target: 5'- --cGCGcGCAAACGccgguucgGCGCACCGCGuGCu -3' miRNA: 3'- cuaCGCuUGUUUGU--------UGCGUGGCGC-CG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 11112 | 0.78 | 0.228593 |
Target: 5'- uGGUGCGcGCGAAgcuggcCGAgGCGCCGUGGCg -3' miRNA: 3'- -CUACGCuUGUUU------GUUgCGUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 28523 | 0.79 | 0.215717 |
Target: 5'- cGAUGCGGuCAGGCAcgcucacGCGCGCCG-GGCu -3' miRNA: 3'- -CUACGCUuGUUUGU-------UGCGUGGCgCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 30799 | 0.82 | 0.125647 |
Target: 5'- --cGCGAuCAAugGcGCGCACCGCGGCc -3' miRNA: 3'- cuaCGCUuGUUugU-UGCGUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 16942 | 0.74 | 0.394484 |
Target: 5'- cGAUGCguGAGCGcuuCAAcCGCGCgGCGGCa -3' miRNA: 3'- -CUACG--CUUGUuu-GUU-GCGUGgCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 30711 | 0.73 | 0.432771 |
Target: 5'- aGGUGC--GCGAGCAgcuugucGCGCugCGUGGCc -3' miRNA: 3'- -CUACGcuUGUUUGU-------UGCGugGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 16454 | 0.71 | 0.540886 |
Target: 5'- cGUGCGcGCGGGCAuGCGCucgACCgcGCGGCa -3' miRNA: 3'- cUACGCuUGUUUGU-UGCG---UGG--CGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 33187 | 0.72 | 0.52971 |
Target: 5'- aGcgGcCGGACGAGCccguccagaugAACGCGCCGCacuGGCa -3' miRNA: 3'- -CuaC-GCUUGUUUG-----------UUGCGUGGCG---CCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 33370 | 0.72 | 0.52971 |
Target: 5'- --aGCGGAUguGC-ACGCGCCggcGCGGCa -3' miRNA: 3'- cuaCGCUUGuuUGuUGCGUGG---CGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 15801 | 0.72 | 0.51862 |
Target: 5'- cGAUGCGGcagucacugaccACGAggcgcagguGCAGCGcUugCGCGGCg -3' miRNA: 3'- -CUACGCU------------UGUU---------UGUUGC-GugGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 30465 | 0.72 | 0.51862 |
Target: 5'- --gGCugGAACAGGCggUGCGCgaCGCGGCc -3' miRNA: 3'- cuaCG--CUUGUUUGuuGCGUG--GCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 18393 | 0.72 | 0.507623 |
Target: 5'- --cGCGAACccGAUGGCcuaCGCCGCGGCg -3' miRNA: 3'- cuaCGCUUGu-UUGUUGc--GUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 27219 | 0.72 | 0.496726 |
Target: 5'- uGAU-CGA--GAACAcggGCGCAUCGCGGCg -3' miRNA: 3'- -CUAcGCUugUUUGU---UGCGUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 41014 | 0.72 | 0.495642 |
Target: 5'- cGUGUGGACAGGCGucuacugGCGC-CgCGCGGUg -3' miRNA: 3'- cUACGCUUGUUUGU-------UGCGuG-GCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 35650 | 0.72 | 0.48272 |
Target: 5'- cGGUGCGAgcucgacgcugucgACAuacAGCAGCGCGCgaucgGCGGCc -3' miRNA: 3'- -CUACGCU--------------UGU---UUGUUGCGUGg----CGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 30608 | 0.73 | 0.454263 |
Target: 5'- --cGCGAGCAAcucgcGCAGCGCGUC-CGGCa -3' miRNA: 3'- cuaCGCUUGUU-----UGUUGCGUGGcGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 4606 | 0.73 | 0.443955 |
Target: 5'- aGAUGC-AACAGAU-GCuCGCCGCGGCg -3' miRNA: 3'- -CUACGcUUGUUUGuUGcGUGGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 15244 | 0.73 | 0.443955 |
Target: 5'- --gGCGGcccgaaGCAGGCAGCcgcaguGCugCGCGGCg -3' miRNA: 3'- cuaCGCU------UGUUUGUUG------CGugGCGCCG- -5' |
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28151 | 5' | -51.3 | NC_005887.1 | + | 12414 | 0.73 | 0.433781 |
Target: 5'- --aGCa---GGGCAACGaCACCGCGGCg -3' miRNA: 3'- cuaCGcuugUUUGUUGC-GUGGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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