miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28151 5' -51.3 NC_005887.1 + 26698 0.67 0.818404
Target:  5'- --cGCGAuACAGcCGucGCGCgGCCGCGGg -3'
miRNA:   3'- cuaCGCU-UGUUuGU--UGCG-UGGCGCCg -5'
28151 5' -51.3 NC_005887.1 + 5648 0.67 0.818404
Target:  5'- --cGCGAGCucgAAGCGAaGCAU-GCGGCa -3'
miRNA:   3'- cuaCGCUUG---UUUGUUgCGUGgCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 9821 0.67 0.818404
Target:  5'- --cGCGAACGcgucGCAGCcgguCAgCGCGGCc -3'
miRNA:   3'- cuaCGCUUGUu---UGUUGc---GUgGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 20150 0.67 0.818404
Target:  5'- gGAUGCGcaaacguCAAGCGGCGgCGCCGuuGUu -3'
miRNA:   3'- -CUACGCuu-----GUUUGUUGC-GUGGCgcCG- -5'
28151 5' -51.3 NC_005887.1 + 20822 0.67 0.815478
Target:  5'- uGcgGCGGACAacuacaucaucgcuAACAACaacCugCGCGGUa -3'
miRNA:   3'- -CuaCGCUUGU--------------UUGUUGc--GugGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 30017 0.67 0.812532
Target:  5'- --cGUGAACGuGACgAACGCGCCGacgccacccucauaGGCg -3'
miRNA:   3'- cuaCGCUUGU-UUG-UUGCGUGGCg-------------CCG- -5'
28151 5' -51.3 NC_005887.1 + 33737 0.67 0.812532
Target:  5'- cGcgGCGAGgAu-CAGCGCGCCGgccuucacgagcaucUGGCg -3'
miRNA:   3'- -CuaCGCUUgUuuGUUGCGUGGC---------------GCCG- -5'
28151 5' -51.3 NC_005887.1 + 37432 0.67 0.808576
Target:  5'- aGGUGCGGAguGgagcGCGGCGCuuGCCugcGCGGUu -3'
miRNA:   3'- -CUACGCUUguU----UGUUGCG--UGG---CGCCG- -5'
28151 5' -51.3 NC_005887.1 + 24747 0.67 0.808576
Target:  5'- --gGCGGuc-GAgGAUGCcgGCCGCGGCu -3'
miRNA:   3'- cuaCGCUuguUUgUUGCG--UGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 19191 0.67 0.808576
Target:  5'- --cGCGGGCGuggaGACAG-GCGgCGCGGUu -3'
miRNA:   3'- cuaCGCUUGU----UUGUUgCGUgGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 24445 0.67 0.808576
Target:  5'- --cGCGAGCAGGacACGCagcaucagGCCGuUGGCg -3'
miRNA:   3'- cuaCGCUUGUUUguUGCG--------UGGC-GCCG- -5'
28151 5' -51.3 NC_005887.1 + 13171 0.67 0.808576
Target:  5'- --cGCGcGCAGACAGCGgGa-GCGGUc -3'
miRNA:   3'- cuaCGCuUGUUUGUUGCgUggCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 19544 0.67 0.807582
Target:  5'- --cGUGGACGGACGGCGUcgauuacGuuGCaGGCa -3'
miRNA:   3'- cuaCGCUUGUUUGUUGCG-------UggCG-CCG- -5'
28151 5' -51.3 NC_005887.1 + 12958 0.67 0.805588
Target:  5'- --cGCGAcgcuACAgcaauccagaccgaAGCGGCGaC-CCGCGGCa -3'
miRNA:   3'- cuaCGCU----UGU--------------UUGUUGC-GuGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 37095 0.67 0.798544
Target:  5'- --aGCGGGCGAGCAcagccucgGCGaucgCGCGGCc -3'
miRNA:   3'- cuaCGCUUGUUUGU--------UGCgug-GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 4390 0.67 0.798544
Target:  5'- --cGuUGAACAAgGCAAUGCGCgccggcgaaggCGCGGCg -3'
miRNA:   3'- cuaC-GCUUGUU-UGUUGCGUG-----------GCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 6426 0.67 0.798544
Target:  5'- --gGCcGAUcuGAACGGCaaCACCGCGGCa -3'
miRNA:   3'- cuaCGcUUG--UUUGUUGc-GUGGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 35867 0.67 0.798544
Target:  5'- -uUGCGcucGGCAGACAccGCGaCGCCGCGc- -3'
miRNA:   3'- cuACGC---UUGUUUGU--UGC-GUGGCGCcg -5'
28151 5' -51.3 NC_005887.1 + 2985 0.67 0.798544
Target:  5'- -uUGCGcAGCuuggcGGCGGCGUcguUCGCGGCg -3'
miRNA:   3'- cuACGC-UUGu----UUGUUGCGu--GGCGCCG- -5'
28151 5' -51.3 NC_005887.1 + 1552 0.67 0.798544
Target:  5'- --cGCGccgcGCGAGCGcCGCacGCCGuCGGCg -3'
miRNA:   3'- cuaCGCu---UGUUUGUuGCG--UGGC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.