Results 81 - 89 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 11300 | 0.73 | 0.07184 |
|
Target: 5'- uGCUCGCAgcgGCCGGCuCGGCAGcgaGCGc -3' miRNA: 3'- gCGGGCGUag-CGGCCG-GCCGUCa--CGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 13454 | 0.74 | 0.055977 |
|
Target: 5'- aCGUCCGCcgCGCCGGCCuuCAGcGCGa -3' miRNA: 3'- -GCGGGCGuaGCGGCCGGccGUCaCGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 35621 | 0.74 | 0.062558 |
|
Target: 5'- uCGCCCGgguugaaGUCGCUcgGGCUGaGCGGUGCGa -3' miRNA: 3'- -GCGGGCg------UAGCGG--CCGGC-CGUCACGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 16305 | 0.75 | 0.050632 |
|
Target: 5'- uGCCCGUGcgcUCGCCGGCCGGCGuaucgaucgugaccUGCGu -3' miRNA: 3'- gCGGGCGU---AGCGGCCGGCCGUc-------------ACGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 40770 | 0.76 | 0.040021 |
|
Target: 5'- gCGCCgCGCGcCGCCGaGCCGGCGGU-CGa -3' miRNA: 3'- -GCGG-GCGUaGCGGC-CGGCCGUCAcGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 3077 | 0.76 | 0.042331 |
|
Target: 5'- uGCCCGCggCGCUGGCC-GCAG-GCGc -3' miRNA: 3'- gCGGGCGuaGCGGCCGGcCGUCaCGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 2059 | 0.77 | 0.037834 |
|
Target: 5'- gCGCUCGUAguaGCCGGCCGGCAGguUGuCGa -3' miRNA: 3'- -GCGGGCGUag-CGGCCGGCCGUC--AC-GC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 23634 | 0.8 | 0.020909 |
|
Target: 5'- gCGUUCGCAcUGCCGGCCGGCGaUGCGg -3' miRNA: 3'- -GCGGGCGUaGCGGCCGGCCGUcACGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 23562 | 1.08 | 0.000112 |
|
Target: 5'- cCGCCCGCAUCGCCGGCCGGCAGUGCGa -3' miRNA: 3'- -GCGGGCGUAGCGGCCGGCCGUCACGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home