Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28152 | 3' | -64.5 | NC_005887.1 | + | 3390 | 0.67 | 0.209068 |
Target: 5'- gCGCaCGCuguUCGCCGcgcgcuaccGCUGGCAGgGCGg -3' miRNA: 3'- -GCGgGCGu--AGCGGC---------CGGCCGUCaCGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 983 | 0.67 | 0.188722 |
Target: 5'- uCGCCgacacgCGCaAUUGCCGGCCG-CcGUGCGc -3' miRNA: 3'- -GCGG------GCG-UAGCGGCCGGCcGuCACGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 2328 | 0.66 | 0.255446 |
Target: 5'- uCGCUgGCAUCuaUGGCgaucCGGCGG-GCGa -3' miRNA: 3'- -GCGGgCGUAGcgGCCG----GCCGUCaCGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 538 | 0.66 | 0.249217 |
Target: 5'- uCGgCCGCcgcgCGCCGcGCCGGauaCAGcGCGa -3' miRNA: 3'- -GCgGGCGua--GCGGC-CGGCC---GUCaCGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 21343 | 0.66 | 0.237134 |
Target: 5'- aCGCCagcagCGCAUaCGCC-GCCGccGCGGUGCc -3' miRNA: 3'- -GCGG-----GCGUA-GCGGcCGGC--CGUCACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 5529 | 0.66 | 0.225547 |
Target: 5'- gGCCUGCGUCGUggUGGaugCGGCAGgagugccaGCGg -3' miRNA: 3'- gCGGGCGUAGCG--GCCg--GCCGUCa-------CGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 4288 | 0.66 | 0.255446 |
Target: 5'- uCGCgCGCGaggucgacauccUCGCCgaGGCCGGcCAGcUGCc -3' miRNA: 3'- -GCGgGCGU------------AGCGG--CCGGCC-GUC-ACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 33447 | 0.66 | 0.255446 |
Target: 5'- aGCCU-CAUCcuGCCcGCCGGCGcGUGCa -3' miRNA: 3'- gCGGGcGUAG--CGGcCGGCCGU-CACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 29566 | 0.66 | 0.249217 |
Target: 5'- gCGCCCGcCGUCgagGCC-GCCGGCuacgacaucGUGCu -3' miRNA: 3'- -GCGGGC-GUAG---CGGcCGGCCGu--------CACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 3033 | 0.66 | 0.231279 |
Target: 5'- aCGgaCGUggaGUCGCCGGCgaggauggucgCGGCGGUGCc -3' miRNA: 3'- -GCggGCG---UAGCGGCCG-----------GCCGUCACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 3267 | 0.66 | 0.230701 |
Target: 5'- gCGCUCGCGgcccuucUCGCUguccgGGCgCGGCAGcUGCc -3' miRNA: 3'- -GCGGGCGU-------AGCGG-----CCG-GCCGUC-ACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 26568 | 0.66 | 0.243113 |
Target: 5'- gCGCUCGaggaaAUCGUcgaggaagCGGCCGGCAugcccGUGCu -3' miRNA: 3'- -GCGGGCg----UAGCG--------GCCGGCCGU-----CACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 4850 | 0.66 | 0.225547 |
Target: 5'- aGCaCgGCcUCGCCGGCUGGCGucaGCu -3' miRNA: 3'- gCG-GgCGuAGCGGCCGGCCGUca-CGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 12421 | 0.66 | 0.219935 |
Target: 5'- gGCCUGCcacgucacCGCCuGGCCGGCGa-GCGa -3' miRNA: 3'- gCGGGCGua------GCGG-CCGGCCGUcaCGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 37170 | 0.66 | 0.219935 |
Target: 5'- gGCCgCGCgAUCGCCgaGGCUGuGCucgcccgcuucGGUGCGa -3' miRNA: 3'- gCGG-GCG-UAGCGG--CCGGC-CG-----------UCACGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 16473 | 0.66 | 0.243113 |
Target: 5'- uCGgCCGCGUgagcuuCCGGCCGGCGGccgucucgacUGCa -3' miRNA: 3'- -GCgGGCGUAgc----GGCCGGCCGUC----------ACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 5581 | 0.66 | 0.243113 |
Target: 5'- uGCCUGCugcgGCCGGUgcugCGGCcGGUGCu -3' miRNA: 3'- gCGGGCGuag-CGGCCG----GCCG-UCACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 28478 | 0.66 | 0.243113 |
Target: 5'- gCGCCUGCGcgCGCuCGGCU-GCGacGUGCGc -3' miRNA: 3'- -GCGGGCGUa-GCG-GCCGGcCGU--CACGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 11706 | 0.66 | 0.249217 |
Target: 5'- gCGUCUGCAacgCGUCGaGCuCGGCAuUGCGc -3' miRNA: 3'- -GCGGGCGUa--GCGGC-CG-GCCGUcACGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 2779 | 0.66 | 0.249217 |
Target: 5'- aGUCCGuCGUCGCgCGGCuCGGCcgcuUGCc -3' miRNA: 3'- gCGGGC-GUAGCG-GCCG-GCCGuc--ACGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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