miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 29417 0.67 0.214443
Target:  5'- gGCUCGaCAgcUCGUCGGCCGaGUAGUcgucgGCGu -3'
miRNA:   3'- gCGGGC-GU--AGCGGCCGGC-CGUCA-----CGC- -5'
28152 3' -64.5 NC_005887.1 + 2180 0.67 0.214443
Target:  5'- gGCCUGa--CGCCGGCCG-CGGUGa- -3'
miRNA:   3'- gCGGGCguaGCGGCCGGCcGUCACgc -5'
28152 3' -64.5 NC_005887.1 + 35893 0.66 0.21938
Target:  5'- gCGCCCGUacuucagGUCGCgcacuucgaucuCGGCCGGCcGUcCGg -3'
miRNA:   3'- -GCGGGCG-------UAGCG------------GCCGGCCGuCAcGC- -5'
28152 3' -64.5 NC_005887.1 + 13273 0.66 0.219935
Target:  5'- gCGUCaGCAgcgacacaCGUCGGCCGGCGGccUGCu -3'
miRNA:   3'- -GCGGgCGUa-------GCGGCCGGCCGUC--ACGc -5'
28152 3' -64.5 NC_005887.1 + 37170 0.66 0.219935
Target:  5'- gGCCgCGCgAUCGCCgaGGCUGuGCucgcccgcuucGGUGCGa -3'
miRNA:   3'- gCGG-GCG-UAGCGG--CCGGC-CG-----------UCACGC- -5'
28152 3' -64.5 NC_005887.1 + 12421 0.66 0.219935
Target:  5'- gGCCUGCcacgucacCGCCuGGCCGGCGa-GCGa -3'
miRNA:   3'- gCGGGCGua------GCGG-CCGGCCGUcaCGC- -5'
28152 3' -64.5 NC_005887.1 + 4850 0.66 0.225547
Target:  5'- aGCaCgGCcUCGCCGGCUGGCGucaGCu -3'
miRNA:   3'- gCG-GgCGuAGCGGCCGGCCGUca-CGc -5'
28152 3' -64.5 NC_005887.1 + 5529 0.66 0.225547
Target:  5'- gGCCUGCGUCGUggUGGaugCGGCAGgagugccaGCGg -3'
miRNA:   3'- gCGGGCGUAGCG--GCCg--GCCGUCa-------CGC- -5'
28152 3' -64.5 NC_005887.1 + 10909 0.66 0.225547
Target:  5'- aGCCggCGCAgaugaCGUCGGCCGGCc-UGCu -3'
miRNA:   3'- gCGG--GCGUa----GCGGCCGGCCGucACGc -5'
28152 3' -64.5 NC_005887.1 + 22659 0.66 0.225547
Target:  5'- gGCgCGCAUUGauauugcaUCGGCCGGUGG-GCGc -3'
miRNA:   3'- gCGgGCGUAGC--------GGCCGGCCGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 3267 0.66 0.230701
Target:  5'- gCGCUCGCGgcccuucUCGCUguccgGGCgCGGCAGcUGCc -3'
miRNA:   3'- -GCGGGCGU-------AGCGG-----CCG-GCCGUC-ACGc -5'
28152 3' -64.5 NC_005887.1 + 3033 0.66 0.231279
Target:  5'- aCGgaCGUggaGUCGCCGGCgaggauggucgCGGCGGUGCc -3'
miRNA:   3'- -GCggGCG---UAGCGGCCG-----------GCCGUCACGc -5'
28152 3' -64.5 NC_005887.1 + 34944 0.66 0.231279
Target:  5'- uCGCCgGCuUCGaacuCGGCgGGC-GUGCGc -3'
miRNA:   3'- -GCGGgCGuAGCg---GCCGgCCGuCACGC- -5'
28152 3' -64.5 NC_005887.1 + 21343 0.66 0.237134
Target:  5'- aCGCCagcagCGCAUaCGCC-GCCGccGCGGUGCc -3'
miRNA:   3'- -GCGG-----GCGUA-GCGGcCGGC--CGUCACGc -5'
28152 3' -64.5 NC_005887.1 + 26915 0.66 0.243113
Target:  5'- gCGCCCGaGUCGCUGGCC-GCcGU-CGa -3'
miRNA:   3'- -GCGGGCgUAGCGGCCGGcCGuCAcGC- -5'
28152 3' -64.5 NC_005887.1 + 27763 0.66 0.243113
Target:  5'- uGCCgaGCG-CGCCGGCgaGGUAGaGCGc -3'
miRNA:   3'- gCGGg-CGUaGCGGCCGg-CCGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 28478 0.66 0.243113
Target:  5'- gCGCCUGCGcgCGCuCGGCU-GCGacGUGCGc -3'
miRNA:   3'- -GCGGGCGUa-GCG-GCCGGcCGU--CACGC- -5'
28152 3' -64.5 NC_005887.1 + 5581 0.66 0.243113
Target:  5'- uGCCUGCugcgGCCGGUgcugCGGCcGGUGCu -3'
miRNA:   3'- gCGGGCGuag-CGGCCG----GCCG-UCACGc -5'
28152 3' -64.5 NC_005887.1 + 16473 0.66 0.243113
Target:  5'- uCGgCCGCGUgagcuuCCGGCCGGCGGccgucucgacUGCa -3'
miRNA:   3'- -GCgGGCGUAgc----GGCCGGCCGUC----------ACGc -5'
28152 3' -64.5 NC_005887.1 + 26568 0.66 0.243113
Target:  5'- gCGCUCGaggaaAUCGUcgaggaagCGGCCGGCAugcccGUGCu -3'
miRNA:   3'- -GCGGGCg----UAGCG--------GCCGGCCGU-----CACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.