miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 15980 0.68 0.183915
Target:  5'- gGCCCGCGcggaaCGCaGGUCGGcCAGcUGCGc -3'
miRNA:   3'- gCGGGCGUa----GCGgCCGGCC-GUC-ACGC- -5'
28152 3' -64.5 NC_005887.1 + 16221 0.69 0.134201
Target:  5'- uCGCUCGCGcacUCGgCGcGCCGGUGGUugGCGg -3'
miRNA:   3'- -GCGGGCGU---AGCgGC-CGGCCGUCA--CGC- -5'
28152 3' -64.5 NC_005887.1 + 16305 0.75 0.050632
Target:  5'- uGCCCGUGcgcUCGCCGGCCGGCGuaucgaucgugaccUGCGu -3'
miRNA:   3'- gCGGGCGU---AGCGGCCGGCCGUc-------------ACGC- -5'
28152 3' -64.5 NC_005887.1 + 16473 0.66 0.243113
Target:  5'- uCGgCCGCGUgagcuuCCGGCCGGCGGccgucucgacUGCa -3'
miRNA:   3'- -GCgGGCGUAgc----GGCCGGCCGUC----------ACGc -5'
28152 3' -64.5 NC_005887.1 + 16517 0.69 0.13782
Target:  5'- gGCCgauCGCGUCGCC-GCCGGCgccgAGUGgGc -3'
miRNA:   3'- gCGG---GCGUAGCGGcCGGCCG----UCACgC- -5'
28152 3' -64.5 NC_005887.1 + 18109 0.67 0.193639
Target:  5'- uCGCCCa-AUCGUCGGCCGuCAGUccgGCGc -3'
miRNA:   3'- -GCGGGcgUAGCGGCCGGCcGUCA---CGC- -5'
28152 3' -64.5 NC_005887.1 + 18195 0.7 0.123863
Target:  5'- gGCCCGCGcuUCGCCGGuuGcGUAcaGCGc -3'
miRNA:   3'- gCGGGCGU--AGCGGCCggC-CGUcaCGC- -5'
28152 3' -64.5 NC_005887.1 + 20832 0.71 0.111227
Target:  5'- gCGCCaCGUGUCGCaacguuGCCGGCGcGUGCa -3'
miRNA:   3'- -GCGG-GCGUAGCGgc----CGGCCGU-CACGc -5'
28152 3' -64.5 NC_005887.1 + 21343 0.66 0.237134
Target:  5'- aCGCCagcagCGCAUaCGCC-GCCGccGCGGUGCc -3'
miRNA:   3'- -GCGG-----GCGUA-GCGGcCGGC--CGUCACGc -5'
28152 3' -64.5 NC_005887.1 + 21495 0.69 0.134201
Target:  5'- -uCUCGCAUCGCC-GCCGGCAaucgGCGc -3'
miRNA:   3'- gcGGGCGUAGCGGcCGGCCGUca--CGC- -5'
28152 3' -64.5 NC_005887.1 + 21575 0.71 0.099805
Target:  5'- aGCCgGCGUCGuuGcgccgauuGCCGGCGGcgaUGCGa -3'
miRNA:   3'- gCGGgCGUAGCggC--------CGGCCGUC---ACGC- -5'
28152 3' -64.5 NC_005887.1 + 22659 0.66 0.225547
Target:  5'- gGCgCGCAUUGauauugcaUCGGCCGGUGG-GCGc -3'
miRNA:   3'- gCGgGCGUAGC--------GGCCGGCCGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 23111 0.67 0.198668
Target:  5'- gGCCaCGUAcgUGuuGGCUGGCGGUGa- -3'
miRNA:   3'- gCGG-GCGUa-GCggCCGGCCGUCACgc -5'
28152 3' -64.5 NC_005887.1 + 23389 0.67 0.209068
Target:  5'- uGCUCGCGcUGCC-GCUGGCAGccUGCa -3'
miRNA:   3'- gCGGGCGUaGCGGcCGGCCGUC--ACGc -5'
28152 3' -64.5 NC_005887.1 + 23442 0.67 0.193639
Target:  5'- cCGCCCGCcauccCGCCGcuuccaccggaaGcCCGGCAGccgGCGa -3'
miRNA:   3'- -GCGGGCGua---GCGGC------------C-GGCCGUCa--CGC- -5'
28152 3' -64.5 NC_005887.1 + 23562 1.08 0.000112
Target:  5'- cCGCCCGCAUCGCCGGCCGGCAGUGCGa -3'
miRNA:   3'- -GCGGGCGUAGCGGCCGGCCGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 23634 0.8 0.020909
Target:  5'- gCGUUCGCAcUGCCGGCCGGCGaUGCGg -3'
miRNA:   3'- -GCGGGCGUaGCGGCCGGCCGUcACGC- -5'
28152 3' -64.5 NC_005887.1 + 25017 0.7 0.13067
Target:  5'- gCGCCgGCGgcCGCCGGCCagccGGUAGcGCa -3'
miRNA:   3'- -GCGGgCGUa-GCGGCCGG----CCGUCaCGc -5'
28152 3' -64.5 NC_005887.1 + 25668 0.67 0.198668
Target:  5'- cCGCagCGCGUCGCCaucGUCGGuCAGUGgGu -3'
miRNA:   3'- -GCGg-GCGUAGCGGc--CGGCC-GUCACgC- -5'
28152 3' -64.5 NC_005887.1 + 26331 0.7 0.123863
Target:  5'- aGgCCGUGgccggCGCUGGCCGGguGcGCGa -3'
miRNA:   3'- gCgGGCGUa----GCGGCCGGCCguCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.