miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 26568 0.66 0.243113
Target:  5'- gCGCUCGaggaaAUCGUcgaggaagCGGCCGGCAugcccGUGCu -3'
miRNA:   3'- -GCGGGCg----UAGCG--------GCCGGCCGU-----CACGc -5'
28152 3' -64.5 NC_005887.1 + 26915 0.66 0.243113
Target:  5'- gCGCCCGaGUCGCUGGCC-GCcGU-CGa -3'
miRNA:   3'- -GCGGGCgUAGCGGCCGGcCGuCAcGC- -5'
28152 3' -64.5 NC_005887.1 + 27264 0.69 0.14078
Target:  5'- gGCCCGCGUCGCCaaugaucGgcacgacuuccauGCCGGacaGGUGCu -3'
miRNA:   3'- gCGGGCGUAGCGG-------C-------------CGGCCg--UCACGc -5'
28152 3' -64.5 NC_005887.1 + 27763 0.66 0.243113
Target:  5'- uGCCgaGCG-CGCCGGCgaGGUAGaGCGc -3'
miRNA:   3'- gCGGg-CGUaGCGGCCGg-CCGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 27994 0.71 0.111227
Target:  5'- gGCCgaauCGCGUCGUCGGCCGGCGu---- -3'
miRNA:   3'- gCGG----GCGUAGCGGCCGGCCGUcacgc -5'
28152 3' -64.5 NC_005887.1 + 28478 0.66 0.243113
Target:  5'- gCGCCUGCGcgCGCuCGGCU-GCGacGUGCGc -3'
miRNA:   3'- -GCGGGCGUa-GCG-GCCGGcCGU--CACGC- -5'
28152 3' -64.5 NC_005887.1 + 29044 0.68 0.161473
Target:  5'- uCGgCCGUuUCGCCGGCCGGUAc---- -3'
miRNA:   3'- -GCgGGCGuAGCGGCCGGCCGUcacgc -5'
28152 3' -64.5 NC_005887.1 + 29417 0.67 0.214443
Target:  5'- gGCUCGaCAgcUCGUCGGCCGaGUAGUcgucgGCGu -3'
miRNA:   3'- gCGGGC-GU--AGCGGCCGGC-CGUCA-----CGC- -5'
28152 3' -64.5 NC_005887.1 + 29566 0.66 0.249217
Target:  5'- gCGCCCGcCGUCgagGCC-GCCGGCuacgacaucGUGCu -3'
miRNA:   3'- -GCGGGC-GUAG---CGGcCGGCCGu--------CACGc -5'
28152 3' -64.5 NC_005887.1 + 30184 0.68 0.161473
Target:  5'- aCGCCUGCAgcuuccacuucUCGCCGGCCaGCcacgccGCGu -3'
miRNA:   3'- -GCGGGCGU-----------AGCGGCCGGcCGuca---CGC- -5'
28152 3' -64.5 NC_005887.1 + 30522 0.68 0.174172
Target:  5'- aGCCCGCGUaggcggcCGUCGGCCGagacgccacGCAGcaGCGu -3'
miRNA:   3'- gCGGGCGUA-------GCGGCCGGC---------CGUCa-CGC- -5'
28152 3' -64.5 NC_005887.1 + 32371 0.7 0.128592
Target:  5'- aCGCaCUGCGgcgCGCCGGCUGGCccgacgaucgccccGUGUGg -3'
miRNA:   3'- -GCG-GGCGUa--GCGGCCGGCCGu-------------CACGC- -5'
28152 3' -64.5 NC_005887.1 + 32747 0.71 0.104517
Target:  5'- gCGCUCGCGUgcgCGCCGgcgcgcgccaugcaGCCGGCucGUGCGc -3'
miRNA:   3'- -GCGGGCGUA---GCGGC--------------CGGCCGu-CACGC- -5'
28152 3' -64.5 NC_005887.1 + 33447 0.66 0.255446
Target:  5'- aGCCU-CAUCcuGCCcGCCGGCGcGUGCa -3'
miRNA:   3'- gCGGGcGUAG--CGGcCGGCCGU-CACGc -5'
28152 3' -64.5 NC_005887.1 + 34358 0.7 0.114268
Target:  5'- cCGCCCGCAgucagcCGCaCGGCgaCGGCA-UGCGc -3'
miRNA:   3'- -GCGGGCGUa-----GCG-GCCG--GCCGUcACGC- -5'
28152 3' -64.5 NC_005887.1 + 34944 0.66 0.231279
Target:  5'- uCGCCgGCuUCGaacuCGGCgGGC-GUGCGc -3'
miRNA:   3'- -GCGGgCGuAGCg---GCCGgCCGuCACGC- -5'
28152 3' -64.5 NC_005887.1 + 35425 0.68 0.167496
Target:  5'- gGCCCGCGUggUGCCgggcgugaagcucguGGCCGGCcGccGCGg -3'
miRNA:   3'- gCGGGCGUA--GCGG---------------CCGGCCGuCa-CGC- -5'
28152 3' -64.5 NC_005887.1 + 35621 0.74 0.062558
Target:  5'- uCGCCCGgguugaaGUCGCUcgGGCUGaGCGGUGCGa -3'
miRNA:   3'- -GCGGGCg------UAGCGG--CCGGC-CGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 35681 0.7 0.114268
Target:  5'- aGCgCGCgAUCGgCGGCCGGCuucGCGg -3'
miRNA:   3'- gCGgGCG-UAGCgGCCGGCCGucaCGC- -5'
28152 3' -64.5 NC_005887.1 + 35893 0.66 0.21938
Target:  5'- gCGCCCGUacuucagGUCGCgcacuucgaucuCGGCCGGCcGUcCGg -3'
miRNA:   3'- -GCGGGCG-------UAGCG------------GCCGGCCGuCAcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.