Results 81 - 89 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 36422 | 0.66 | 0.243113 |
|
Target: 5'- gCGCaCCGCcuucCGCgCGGCCGGCuucuUGCc -3' miRNA: 3'- -GCG-GGCGua--GCG-GCCGGCCGuc--ACGc -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 36488 | 0.7 | 0.120584 |
|
Target: 5'- aGCCgGCcgCG-CGGaaGGCGGUGCGc -3' miRNA: 3'- gCGGgCGuaGCgGCCggCCGUCACGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 37170 | 0.66 | 0.219935 |
|
Target: 5'- gGCCgCGCgAUCGCCgaGGCUGuGCucgcccgcuucGGUGCGa -3' miRNA: 3'- gCGG-GCG-UAGCGG--CCGGC-CG-----------UCACGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 39611 | 0.69 | 0.14078 |
|
Target: 5'- aGCCCGUcgCGCgGauugggguacagaGCCGGCgccaguuGGUGCGg -3' miRNA: 3'- gCGGGCGuaGCGgC-------------CGGCCG-------UCACGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 39886 | 0.69 | 0.145328 |
|
Target: 5'- gGCCCGUcgCGCUuuauCCaGCAGUGCGa -3' miRNA: 3'- gCGGGCGuaGCGGcc--GGcCGUCACGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 40264 | 0.66 | 0.249217 |
|
Target: 5'- uGUUCGUGcugcCGCUGGCCGGCaagucGGUGCc -3' miRNA: 3'- gCGGGCGUa---GCGGCCGGCCG-----UCACGc -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 40691 | 0.68 | 0.174625 |
|
Target: 5'- gGCgCGCG-CGCaCGGCUGGCAGgaGCc -3' miRNA: 3'- gCGgGCGUaGCG-GCCGGCCGUCa-CGc -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 40770 | 0.76 | 0.040021 |
|
Target: 5'- gCGCCgCGCGcCGCCGaGCCGGCGGU-CGa -3' miRNA: 3'- -GCGG-GCGUaGCGGC-CGGCCGUCAcGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 40851 | 0.68 | 0.179217 |
|
Target: 5'- cCGCCaCGaaccucgacCGCCGGCuCGGCGGcGCGc -3' miRNA: 3'- -GCGG-GCgua------GCGGCCG-GCCGUCaCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home