miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 21343 0.66 0.237134
Target:  5'- aCGCCagcagCGCAUaCGCC-GCCGccGCGGUGCc -3'
miRNA:   3'- -GCGG-----GCGUA-GCGGcCGGC--CGUCACGc -5'
28152 3' -64.5 NC_005887.1 + 20832 0.71 0.111227
Target:  5'- gCGCCaCGUGUCGCaacguuGCCGGCGcGUGCa -3'
miRNA:   3'- -GCGG-GCGUAGCGgc----CGGCCGU-CACGc -5'
28152 3' -64.5 NC_005887.1 + 18195 0.7 0.123863
Target:  5'- gGCCCGCGcuUCGCCGGuuGcGUAcaGCGc -3'
miRNA:   3'- gCGGGCGU--AGCGGCCggC-CGUcaCGC- -5'
28152 3' -64.5 NC_005887.1 + 18109 0.67 0.193639
Target:  5'- uCGCCCa-AUCGUCGGCCGuCAGUccgGCGc -3'
miRNA:   3'- -GCGGGcgUAGCGGCCGGCcGUCA---CGC- -5'
28152 3' -64.5 NC_005887.1 + 16517 0.69 0.13782
Target:  5'- gGCCgauCGCGUCGCC-GCCGGCgccgAGUGgGc -3'
miRNA:   3'- gCGG---GCGUAGCGGcCGGCCG----UCACgC- -5'
28152 3' -64.5 NC_005887.1 + 16473 0.66 0.243113
Target:  5'- uCGgCCGCGUgagcuuCCGGCCGGCGGccgucucgacUGCa -3'
miRNA:   3'- -GCgGGCGUAgc----GGCCGGCCGUC----------ACGc -5'
28152 3' -64.5 NC_005887.1 + 16305 0.75 0.050632
Target:  5'- uGCCCGUGcgcUCGCCGGCCGGCGuaucgaucgugaccUGCGu -3'
miRNA:   3'- gCGGGCGU---AGCGGCCGGCCGUc-------------ACGC- -5'
28152 3' -64.5 NC_005887.1 + 16221 0.69 0.134201
Target:  5'- uCGCUCGCGcacUCGgCGcGCCGGUGGUugGCGg -3'
miRNA:   3'- -GCGGGCGU---AGCgGC-CGGCCGUCA--CGC- -5'
28152 3' -64.5 NC_005887.1 + 15980 0.68 0.183915
Target:  5'- gGCCCGCGcggaaCGCaGGUCGGcCAGcUGCGc -3'
miRNA:   3'- gCGGGCGUa----GCGgCCGGCC-GUC-ACGC- -5'
28152 3' -64.5 NC_005887.1 + 14975 0.67 0.203811
Target:  5'- aCGCCuaCGCcgCGCaGGCCGcGCAGgccgcagGCGu -3'
miRNA:   3'- -GCGG--GCGuaGCGgCCGGC-CGUCa------CGC- -5'
28152 3' -64.5 NC_005887.1 + 14088 0.69 0.141529
Target:  5'- gCGCCgGCggCGC--GCCGGCGGUuGCGg -3'
miRNA:   3'- -GCGGgCGuaGCGgcCGGCCGUCA-CGC- -5'
28152 3' -64.5 NC_005887.1 + 13640 0.7 0.127224
Target:  5'- gGCCuccuuCGCGUCGUCGGCCugcucgggcGGCAGcGCa -3'
miRNA:   3'- gCGG-----GCGUAGCGGCCGG---------CCGUCaCGc -5'
28152 3' -64.5 NC_005887.1 + 13524 0.67 0.203292
Target:  5'- gCGCCUGCG-CGCCcgucaggaugaacGuGCUGaGCGGUGCGc -3'
miRNA:   3'- -GCGGGCGUaGCGG-------------C-CGGC-CGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 13454 0.74 0.055977
Target:  5'- aCGUCCGCcgCGCCGGCCuuCAGcGCGa -3'
miRNA:   3'- -GCGGGCGuaGCGGCCGGccGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 13381 0.69 0.13782
Target:  5'- gCGCUCGCGcugaagGCCGGCgCGGCGGacgucgGCGg -3'
miRNA:   3'- -GCGGGCGUag----CGGCCG-GCCGUCa-----CGC- -5'
28152 3' -64.5 NC_005887.1 + 13328 0.69 0.153208
Target:  5'- cCGgCCGCAUCGCgGaucucGCCGcGCAGUGg- -3'
miRNA:   3'- -GCgGGCGUAGCGgC-----CGGC-CGUCACgc -5'
28152 3' -64.5 NC_005887.1 + 13273 0.66 0.219935
Target:  5'- gCGUCaGCAgcgacacaCGUCGGCCGGCGGccUGCu -3'
miRNA:   3'- -GCGGgCGUa-------GCGGCCGGCCGUC--ACGc -5'
28152 3' -64.5 NC_005887.1 + 12708 0.67 0.193639
Target:  5'- aCGCgCGCA-CGCUGGUCGcGCAGcagcagaaUGCGc -3'
miRNA:   3'- -GCGgGCGUaGCGGCCGGC-CGUC--------ACGC- -5'
28152 3' -64.5 NC_005887.1 + 12659 0.67 0.188722
Target:  5'- aCGCCgaGCGUCGCggccgGGUCGGCGGacaccaUGCGc -3'
miRNA:   3'- -GCGGg-CGUAGCGg----CCGGCCGUC------ACGC- -5'
28152 3' -64.5 NC_005887.1 + 12421 0.66 0.219935
Target:  5'- gGCCUGCcacgucacCGCCuGGCCGGCGa-GCGa -3'
miRNA:   3'- gCGGGCGua------GCGG-CCGGCCGUcaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.