Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28152 | 3' | -64.5 | NC_005887.1 | + | 12340 | 0.73 | 0.07803 |
Target: 5'- gCGUacgUCGC-UCGCCGGCCaGGCGGUGaCGu -3' miRNA: 3'- -GCG---GGCGuAGCGGCCGG-CCGUCAC-GC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 11706 | 0.66 | 0.249217 |
Target: 5'- gCGUCUGCAacgCGUCGaGCuCGGCAuUGCGc -3' miRNA: 3'- -GCGGGCGUa--GCGGC-CG-GCCGUcACGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 11466 | 0.67 | 0.188722 |
Target: 5'- uGCCUugGCggCGCCGGCCGcCAGcGCu -3' miRNA: 3'- gCGGG--CGuaGCGGCCGGCcGUCaCGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 11372 | 0.7 | 0.127224 |
Target: 5'- gCGCUCGC--UGCCGaGCCGGCcGcUGCGa -3' miRNA: 3'- -GCGGGCGuaGCGGC-CGGCCGuC-ACGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 11300 | 0.73 | 0.07184 |
Target: 5'- uGCUCGCAgcgGCCGGCuCGGCAGcgaGCGc -3' miRNA: 3'- gCGGGCGUag-CGGCCG-GCCGUCa--CGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 10909 | 0.66 | 0.225547 |
Target: 5'- aGCCggCGCAgaugaCGUCGGCCGGCc-UGCu -3' miRNA: 3'- gCGG--GCGUa----GCGGCCGGCCGucACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 9817 | 0.7 | 0.120584 |
Target: 5'- gGCCCGCGaacgCGUCGcaGCCGGuCAGcGCGg -3' miRNA: 3'- gCGGGCGUa---GCGGC--CGGCC-GUCaCGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 9354 | 0.69 | 0.13782 |
Target: 5'- uGCCCGUaaccugcggcGUCGCCGuGCCGaccGCcGUGCa -3' miRNA: 3'- gCGGGCG----------UAGCGGC-CGGC---CGuCACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 8543 | 0.67 | 0.193639 |
Target: 5'- aGCCaCGUGUCGUC-GCCGaGCGGuUGCGc -3' miRNA: 3'- gCGG-GCGUAGCGGcCGGC-CGUC-ACGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 5581 | 0.66 | 0.243113 |
Target: 5'- uGCCUGCugcgGCCGGUgcugCGGCcGGUGCu -3' miRNA: 3'- gCGGGCGuag-CGGCCG----GCCG-UCACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 5529 | 0.66 | 0.225547 |
Target: 5'- gGCCUGCGUCGUggUGGaugCGGCAGgagugccaGCGg -3' miRNA: 3'- gCGGGCGUAGCG--GCCg--GCCGUCa-------CGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 4883 | 0.72 | 0.086844 |
Target: 5'- cCGCUCGCgacgaugGUCGCCgagGGCCGGCGcgagguguucGUGCGc -3' miRNA: 3'- -GCGGGCG-------UAGCGG---CCGGCCGU----------CACGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 4850 | 0.66 | 0.225547 |
Target: 5'- aGCaCgGCcUCGCCGGCUGGCGucaGCu -3' miRNA: 3'- gCG-GgCGuAGCGGCCGGCCGUca-CGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 4288 | 0.66 | 0.255446 |
Target: 5'- uCGCgCGCGaggucgacauccUCGCCgaGGCCGGcCAGcUGCc -3' miRNA: 3'- -GCGgGCGU------------AGCGG--CCGGCC-GUC-ACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 3390 | 0.67 | 0.209068 |
Target: 5'- gCGCaCGCuguUCGCCGcgcgcuaccGCUGGCAGgGCGg -3' miRNA: 3'- -GCGgGCGu--AGCGGC---------CGGCCGUCaCGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 3267 | 0.66 | 0.230701 |
Target: 5'- gCGCUCGCGgcccuucUCGCUguccgGGCgCGGCAGcUGCc -3' miRNA: 3'- -GCGGGCGU-------AGCGG-----CCG-GCCGUC-ACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 3077 | 0.76 | 0.042331 |
Target: 5'- uGCCCGCggCGCUGGCC-GCAG-GCGc -3' miRNA: 3'- gCGGGCGuaGCGGCCGGcCGUCaCGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 3033 | 0.66 | 0.231279 |
Target: 5'- aCGgaCGUggaGUCGCCGGCgaggauggucgCGGCGGUGCc -3' miRNA: 3'- -GCggGCG---UAGCGGCCG-----------GCCGUCACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 2779 | 0.66 | 0.249217 |
Target: 5'- aGUCCGuCGUCGCgCGGCuCGGCcgcuUGCc -3' miRNA: 3'- gCGGGC-GUAGCG-GCCG-GCCGuc--ACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 2328 | 0.66 | 0.255446 |
Target: 5'- uCGCUgGCAUCuaUGGCgaucCGGCGG-GCGa -3' miRNA: 3'- -GCGGgCGUAGcgGCCG----GCCGUCaCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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