Results 81 - 89 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 2180 | 0.67 | 0.214443 |
|
Target: 5'- gGCCUGa--CGCCGGCCG-CGGUGa- -3' miRNA: 3'- gCGGGCguaGCGGCCGGCcGUCACgc -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 2059 | 0.77 | 0.037834 |
|
Target: 5'- gCGCUCGUAguaGCCGGCCGGCAGguUGuCGa -3' miRNA: 3'- -GCGGGCGUag-CGGCCGGCCGUC--AC-GC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 1488 | 0.69 | 0.13782 |
|
Target: 5'- gGCgUGCGgcgcUCGCgCGGCgCGGCcGUGCGg -3' miRNA: 3'- gCGgGCGU----AGCG-GCCG-GCCGuCACGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 1062 | 0.71 | 0.10537 |
|
Target: 5'- gCGCgCGCA-CGgCGGCCGGCAauuUGCGc -3' miRNA: 3'- -GCGgGCGUaGCgGCCGGCCGUc--ACGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 983 | 0.67 | 0.188722 |
|
Target: 5'- uCGCCgacacgCGCaAUUGCCGGCCG-CcGUGCGc -3' miRNA: 3'- -GCGG------GCG-UAGCGGCCGGCcGuCACGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 878 | 0.69 | 0.13782 |
|
Target: 5'- gGCCCGCGcCGCCGGaCGaGuCAG-GCGg -3' miRNA: 3'- gCGGGCGUaGCGGCCgGC-C-GUCaCGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 642 | 0.68 | 0.183915 |
|
Target: 5'- gGUUCuCAUCGCCcaucuGGCCGGCGGUcuucGCGc -3' miRNA: 3'- gCGGGcGUAGCGG-----CCGGCCGUCA----CGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 538 | 0.66 | 0.249217 |
|
Target: 5'- uCGgCCGCcgcgCGCCGcGCCGGauaCAGcGCGa -3' miRNA: 3'- -GCgGGCGua--GCGGC-CGGCC---GUCaCGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 427 | 0.68 | 0.17192 |
|
Target: 5'- cCGCCCGCuGUUGCUgcgcucgaacccucuGGCgCGuGUGGUGCGg -3' miRNA: 3'- -GCGGGCG-UAGCGG---------------CCG-GC-CGUCACGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home