Results 81 - 89 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 12659 | 0.67 | 0.188722 |
|
Target: 5'- aCGCCgaGCGUCGCggccgGGUCGGCGGacaccaUGCGc -3' miRNA: 3'- -GCGGg-CGUAGCGg----CCGGCCGUC------ACGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 18109 | 0.67 | 0.193639 |
|
Target: 5'- uCGCCCa-AUCGUCGGCCGuCAGUccgGCGc -3' miRNA: 3'- -GCGGGcgUAGCGGCCGGCcGUCA---CGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 8543 | 0.67 | 0.193639 |
|
Target: 5'- aGCCaCGUGUCGUC-GCCGaGCGGuUGCGc -3' miRNA: 3'- gCGG-GCGUAGCGGcCGGC-CGUC-ACGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 13524 | 0.67 | 0.203292 |
|
Target: 5'- gCGCCUGCG-CGCCcgucaggaugaacGuGCUGaGCGGUGCGc -3' miRNA: 3'- -GCGGGCGUaGCGG-------------C-CGGC-CGUCACGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 13273 | 0.66 | 0.219935 |
|
Target: 5'- gCGUCaGCAgcgacacaCGUCGGCCGGCGGccUGCu -3' miRNA: 3'- -GCGGgCGUa-------GCGGCCGGCCGUC--ACGc -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 37170 | 0.66 | 0.219935 |
|
Target: 5'- gGCCgCGCgAUCGCCgaGGCUGuGCucgcccgcuucGGUGCGa -3' miRNA: 3'- gCGG-GCG-UAGCGG--CCGGC-CG-----------UCACGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 12421 | 0.66 | 0.219935 |
|
Target: 5'- gGCCUGCcacgucacCGCCuGGCCGGCGa-GCGa -3' miRNA: 3'- gCGGGCGua------GCGG-CCGGCCGUcaCGC- -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 4850 | 0.66 | 0.225547 |
|
Target: 5'- aGCaCgGCcUCGCCGGCUGGCGucaGCu -3' miRNA: 3'- gCG-GgCGuAGCGGCCGGCCGUca-CGc -5' |
|||||||
| 28152 | 3' | -64.5 | NC_005887.1 | + | 33447 | 0.66 | 0.255446 |
|
Target: 5'- aGCCU-CAUCcuGCCcGCCGGCGcGUGCa -3' miRNA: 3'- gCGGGcGUAG--CGGcCGGCCGU-CACGc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home