miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 18109 0.67 0.193639
Target:  5'- uCGCCCa-AUCGUCGGCCGuCAGUccgGCGc -3'
miRNA:   3'- -GCGGGcgUAGCGGCCGGCcGUCA---CGC- -5'
28152 3' -64.5 NC_005887.1 + 36488 0.7 0.120584
Target:  5'- aGCCgGCcgCG-CGGaaGGCGGUGCGc -3'
miRNA:   3'- gCGGgCGuaGCgGCCggCCGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 13640 0.7 0.127224
Target:  5'- gGCCuccuuCGCGUCGUCGGCCugcucgggcGGCAGcGCa -3'
miRNA:   3'- gCGG-----GCGUAGCGGCCGG---------CCGUCaCGc -5'
28152 3' -64.5 NC_005887.1 + 2059 0.77 0.037834
Target:  5'- gCGCUCGUAguaGCCGGCCGGCAGguUGuCGa -3'
miRNA:   3'- -GCGGGCGUag-CGGCCGGCCGUC--AC-GC- -5'
28152 3' -64.5 NC_005887.1 + 4883 0.72 0.086844
Target:  5'- cCGCUCGCgacgaugGUCGCCgagGGCCGGCGcgagguguucGUGCGc -3'
miRNA:   3'- -GCGGGCG-------UAGCGG---CCGGCCGU----------CACGC- -5'
28152 3' -64.5 NC_005887.1 + 32747 0.71 0.104517
Target:  5'- gCGCUCGCGUgcgCGCCGgcgcgcgccaugcaGCCGGCucGUGCGc -3'
miRNA:   3'- -GCGGGCGUA---GCGGC--------------CGGCCGu-CACGC- -5'
28152 3' -64.5 NC_005887.1 + 35621 0.74 0.062558
Target:  5'- uCGCCCGgguugaaGUCGCUcgGGCUGaGCGGUGCGa -3'
miRNA:   3'- -GCGGGCg------UAGCGG--CCGGC-CGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 23389 0.67 0.209068
Target:  5'- uGCUCGCGcUGCC-GCUGGCAGccUGCa -3'
miRNA:   3'- gCGGGCGUaGCGGcCGGCCGUC--ACGc -5'
28152 3' -64.5 NC_005887.1 + 25017 0.7 0.13067
Target:  5'- gCGCCgGCGgcCGCCGGCCagccGGUAGcGCa -3'
miRNA:   3'- -GCGGgCGUa-GCGGCCGG----CCGUCaCGc -5'
28152 3' -64.5 NC_005887.1 + 21495 0.69 0.134201
Target:  5'- -uCUCGCAUCGCC-GCCGGCAaucgGCGc -3'
miRNA:   3'- gcGGGCGUAGCGGcCGGCCGUca--CGC- -5'
28152 3' -64.5 NC_005887.1 + 14975 0.67 0.203811
Target:  5'- aCGCCuaCGCcgCGCaGGCCGcGCAGgccgcagGCGu -3'
miRNA:   3'- -GCGG--GCGuaGCGgCCGGC-CGUCa------CGC- -5'
28152 3' -64.5 NC_005887.1 + 23111 0.67 0.198668
Target:  5'- gGCCaCGUAcgUGuuGGCUGGCGGUGa- -3'
miRNA:   3'- gCGG-GCGUa-GCggCCGGCCGUCACgc -5'
28152 3' -64.5 NC_005887.1 + 23442 0.67 0.193639
Target:  5'- cCGCCCGCcauccCGCCGcuuccaccggaaGcCCGGCAGccgGCGa -3'
miRNA:   3'- -GCGGGCGua---GCGGC------------C-GGCCGUCa--CGC- -5'
28152 3' -64.5 NC_005887.1 + 12708 0.67 0.193639
Target:  5'- aCGCgCGCA-CGCUGGUCGcGCAGcagcagaaUGCGc -3'
miRNA:   3'- -GCGgGCGUaGCGGCCGGC-CGUC--------ACGC- -5'
28152 3' -64.5 NC_005887.1 + 983 0.67 0.188722
Target:  5'- uCGCCgacacgCGCaAUUGCCGGCCG-CcGUGCGc -3'
miRNA:   3'- -GCGG------GCG-UAGCGGCCGGCcGuCACGC- -5'
28152 3' -64.5 NC_005887.1 + 30522 0.68 0.174172
Target:  5'- aGCCCGCGUaggcggcCGUCGGCCGagacgccacGCAGcaGCGu -3'
miRNA:   3'- gCGGGCGUA-------GCGGCCGGC---------CGUCa-CGC- -5'
28152 3' -64.5 NC_005887.1 + 40691 0.68 0.174625
Target:  5'- gGCgCGCG-CGCaCGGCUGGCAGgaGCc -3'
miRNA:   3'- gCGgGCGUaGCG-GCCGGCCGUCa-CGc -5'
28152 3' -64.5 NC_005887.1 + 4288 0.66 0.255446
Target:  5'- uCGCgCGCGaggucgacauccUCGCCgaGGCCGGcCAGcUGCc -3'
miRNA:   3'- -GCGgGCGU------------AGCGG--CCGGCC-GUC-ACGc -5'
28152 3' -64.5 NC_005887.1 + 878 0.69 0.13782
Target:  5'- gGCCCGCGcCGCCGGaCGaGuCAG-GCGg -3'
miRNA:   3'- gCGGGCGUaGCGGCCgGC-C-GUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 13381 0.69 0.13782
Target:  5'- gCGCUCGCGcugaagGCCGGCgCGGCGGacgucgGCGg -3'
miRNA:   3'- -GCGGGCGUag----CGGCCG-GCCGUCa-----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.