miRNA display CGI


Results 61 - 80 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 4883 0.72 0.086844
Target:  5'- cCGCUCGCgacgaugGUCGCCgagGGCCGGCGcgagguguucGUGCGc -3'
miRNA:   3'- -GCGGGCG-------UAGCGG---CCGGCCGU----------CACGC- -5'
28152 3' -64.5 NC_005887.1 + 12340 0.73 0.07803
Target:  5'- gCGUacgUCGC-UCGCCGGCCaGGCGGUGaCGu -3'
miRNA:   3'- -GCG---GGCGuAGCGGCCGG-CCGUCAC-GC- -5'
28152 3' -64.5 NC_005887.1 + 40691 0.68 0.174625
Target:  5'- gGCgCGCG-CGCaCGGCUGGCAGgaGCc -3'
miRNA:   3'- gCGgGCGUaGCG-GCCGGCCGUCa-CGc -5'
28152 3' -64.5 NC_005887.1 + 983 0.67 0.188722
Target:  5'- uCGCCgacacgCGCaAUUGCCGGCCG-CcGUGCGc -3'
miRNA:   3'- -GCGG------GCG-UAGCGGCCGGCcGuCACGC- -5'
28152 3' -64.5 NC_005887.1 + 12708 0.67 0.193639
Target:  5'- aCGCgCGCA-CGCUGGUCGcGCAGcagcagaaUGCGc -3'
miRNA:   3'- -GCGgGCGUaGCGGCCGGC-CGUC--------ACGC- -5'
28152 3' -64.5 NC_005887.1 + 2328 0.66 0.255446
Target:  5'- uCGCUgGCAUCuaUGGCgaucCGGCGG-GCGa -3'
miRNA:   3'- -GCGGgCGUAGcgGCCG----GCCGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 538 0.66 0.249217
Target:  5'- uCGgCCGCcgcgCGCCGcGCCGGauaCAGcGCGa -3'
miRNA:   3'- -GCgGGCGua--GCGGC-CGGCC---GUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 40264 0.66 0.249217
Target:  5'- uGUUCGUGcugcCGCUGGCCGGCaagucGGUGCc -3'
miRNA:   3'- gCGGGCGUa---GCGGCCGGCCG-----UCACGc -5'
28152 3' -64.5 NC_005887.1 + 36422 0.66 0.243113
Target:  5'- gCGCaCCGCcuucCGCgCGGCCGGCuucuUGCc -3'
miRNA:   3'- -GCG-GGCGua--GCG-GCCGGCCGuc--ACGc -5'
28152 3' -64.5 NC_005887.1 + 26915 0.66 0.243113
Target:  5'- gCGCCCGaGUCGCUGGCC-GCcGU-CGa -3'
miRNA:   3'- -GCGGGCgUAGCGGCCGGcCGuCAcGC- -5'
28152 3' -64.5 NC_005887.1 + 27763 0.66 0.243113
Target:  5'- uGCCgaGCG-CGCCGGCgaGGUAGaGCGc -3'
miRNA:   3'- gCGGg-CGUaGCGGCCGg-CCGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 34944 0.66 0.231279
Target:  5'- uCGCCgGCuUCGaacuCGGCgGGC-GUGCGc -3'
miRNA:   3'- -GCGGgCGuAGCg---GCCGgCCGuCACGC- -5'
28152 3' -64.5 NC_005887.1 + 22659 0.66 0.225547
Target:  5'- gGCgCGCAUUGauauugcaUCGGCCGGUGG-GCGc -3'
miRNA:   3'- gCGgGCGUAGC--------GGCCGGCCGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 10909 0.66 0.225547
Target:  5'- aGCCggCGCAgaugaCGUCGGCCGGCc-UGCu -3'
miRNA:   3'- gCGG--GCGUa----GCGGCCGGCCGucACGc -5'
28152 3' -64.5 NC_005887.1 + 35893 0.66 0.21938
Target:  5'- gCGCCCGUacuucagGUCGCgcacuucgaucuCGGCCGGCcGUcCGg -3'
miRNA:   3'- -GCGGGCG-------UAGCG------------GCCGGCCGuCAcGC- -5'
28152 3' -64.5 NC_005887.1 + 29417 0.67 0.214443
Target:  5'- gGCUCGaCAgcUCGUCGGCCGaGUAGUcgucgGCGu -3'
miRNA:   3'- gCGGGC-GU--AGCGGCCGGC-CGUCA-----CGC- -5'
28152 3' -64.5 NC_005887.1 + 14975 0.67 0.203811
Target:  5'- aCGCCuaCGCcgCGCaGGCCGcGCAGgccgcagGCGu -3'
miRNA:   3'- -GCGG--GCGuaGCGgCCGGC-CGUCa------CGC- -5'
28152 3' -64.5 NC_005887.1 + 25668 0.67 0.198668
Target:  5'- cCGCagCGCGUCGCCaucGUCGGuCAGUGgGu -3'
miRNA:   3'- -GCGg-GCGUAGCGGc--CGGCC-GUCACgC- -5'
28152 3' -64.5 NC_005887.1 + 23111 0.67 0.198668
Target:  5'- gGCCaCGUAcgUGuuGGCUGGCGGUGa- -3'
miRNA:   3'- gCGG-GCGUa-GCggCCGGCCGUCACgc -5'
28152 3' -64.5 NC_005887.1 + 23442 0.67 0.193639
Target:  5'- cCGCCCGCcauccCGCCGcuuccaccggaaGcCCGGCAGccgGCGa -3'
miRNA:   3'- -GCGGGCGua---GCGGC------------C-GGCCGUCa--CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.