miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 5' -52.8 NC_005887.1 + 23599 1.07 0.001758
Target:  5'- cGACGCGCUGACCGUAUCCGACGAAAAg -3'
miRNA:   3'- -CUGCGCGACUGGCAUAGGCUGCUUUU- -5'
28152 5' -52.8 NC_005887.1 + 13578 0.73 0.363988
Target:  5'- uGGCGCGCaUGcCCGUG-CCGGCGAc-- -3'
miRNA:   3'- -CUGCGCG-ACuGGCAUaGGCUGCUuuu -5'
28152 5' -52.8 NC_005887.1 + 30269 0.73 0.382239
Target:  5'- cGACGCgGCgUGGCUGg--CCGGCGAGAAg -3'
miRNA:   3'- -CUGCG-CG-ACUGGCauaGGCUGCUUUU- -5'
28152 5' -52.8 NC_005887.1 + 21521 0.72 0.391591
Target:  5'- cGACcCGCUGACCGUGcUCGACGcuGAg -3'
miRNA:   3'- -CUGcGCGACUGGCAUaGGCUGCuuUU- -5'
28152 5' -52.8 NC_005887.1 + 9890 0.72 0.391591
Target:  5'- -cCGCGCUGACCGgcUgCGACGc--- -3'
miRNA:   3'- cuGCGCGACUGGCauAgGCUGCuuuu -5'
28152 5' -52.8 NC_005887.1 + 32363 0.71 0.440512
Target:  5'- cGGCGCGCcGGCUGgc-CCGACGAu-- -3'
miRNA:   3'- -CUGCGCGaCUGGCauaGGCUGCUuuu -5'
28152 5' -52.8 NC_005887.1 + 23654 0.71 0.482044
Target:  5'- uACGCGCUGAUUGUcggagauaAUCCGGCGc--- -3'
miRNA:   3'- cUGCGCGACUGGCA--------UAGGCUGCuuuu -5'
28152 5' -52.8 NC_005887.1 + 6928 0.7 0.536452
Target:  5'- uGCGCGUUGGCCGacgucgcgagGUCCGACa---- -3'
miRNA:   3'- cUGCGCGACUGGCa---------UAGGCUGcuuuu -5'
28152 5' -52.8 NC_005887.1 + 16466 0.69 0.558824
Target:  5'- cAUGCGCUcGACCGcgcggcaggAUCCGGCGGGc- -3'
miRNA:   3'- cUGCGCGA-CUGGCa--------UAGGCUGCUUuu -5'
28152 5' -52.8 NC_005887.1 + 27422 0.69 0.581451
Target:  5'- aGCGUGCUGACCGUcuugCCGAgGc--- -3'
miRNA:   3'- cUGCGCGACUGGCAua--GGCUgCuuuu -5'
28152 5' -52.8 NC_005887.1 + 26438 0.69 0.581451
Target:  5'- cGCGCGCUGcaGCCGcgcgagAUCCGACuuGAAg -3'
miRNA:   3'- cUGCGCGAC--UGGCa-----UAGGCUGcuUUU- -5'
28152 5' -52.8 NC_005887.1 + 4664 0.69 0.590558
Target:  5'- cGACGCGCaGACCGcugcgcagaCGGCGAGGGu -3'
miRNA:   3'- -CUGCGCGaCUGGCauag-----GCUGCUUUU- -5'
28152 5' -52.8 NC_005887.1 + 18035 0.69 0.604261
Target:  5'- cGCGCGCcgGACUGacggCCGACGAu-- -3'
miRNA:   3'- cUGCGCGa-CUGGCaua-GGCUGCUuuu -5'
28152 5' -52.8 NC_005887.1 + 33799 0.68 0.627174
Target:  5'- cGGCGCGCUGAUCcUcgCCG-CGAu-- -3'
miRNA:   3'- -CUGCGCGACUGGcAuaGGCuGCUuuu -5'
28152 5' -52.8 NC_005887.1 + 13557 0.68 0.636349
Target:  5'- cGAUGCGCUG-CCGcccgagcaggCCGACGAc-- -3'
miRNA:   3'- -CUGCGCGACuGGCaua-------GGCUGCUuuu -5'
28152 5' -52.8 NC_005887.1 + 14397 0.68 0.638643
Target:  5'- cGCGCGCguacGACC-UGUCCGACa---- -3'
miRNA:   3'- cUGCGCGa---CUGGcAUAGGCUGcuuuu -5'
28152 5' -52.8 NC_005887.1 + 41408 0.68 0.650106
Target:  5'- cGGCGCGCgGAUCGUAcucaaCCGGCGu--- -3'
miRNA:   3'- -CUGCGCGaCUGGCAUa----GGCUGCuuuu -5'
28152 5' -52.8 NC_005887.1 + 13105 0.68 0.661551
Target:  5'- cGGCGaCGCUGGCCGUguggAUCUGcuCGAGc- -3'
miRNA:   3'- -CUGC-GCGACUGGCA----UAGGCu-GCUUuu -5'
28152 5' -52.8 NC_005887.1 + 12103 0.67 0.670685
Target:  5'- cGACGUGCUGGCCGcgcagaagcgCCagGACGAGc- -3'
miRNA:   3'- -CUGCGCGACUGGCaua-------GG--CUGCUUuu -5'
28152 5' -52.8 NC_005887.1 + 23506 0.67 0.684339
Target:  5'- cGACGUGUUcGGCCGcg-CUGACGAAc- -3'
miRNA:   3'- -CUGCGCGA-CUGGCauaGGCUGCUUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.