miRNA: 3'- guaaCAGGuCGGCGcCGGCCGU----AGGa -5'
miRNA: 3'- guaacAGGUCGGCGCCGGCCGUaGGa -5'
miRNA: 3'- -GUAACAGGUCGGCGCCGGCCGUAGGA- -5'
Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28156 | 3' | -59.6 | NC_005887.1 | + | 33278 | 0.72 | 0.144791 |
|
Target: 5'- ---cGUCCcGCCGCaGCCGGCGcacuUCCa -3' miRNA: 3'- guaaCAGGuCGGCGcCGGCCGU----AGGa -5' |
|||||||
| 28156 | 3' | -59.6 | NC_005887.1 | + | 34409 | 0.8 | 0.041146 |
|
Target: 5'- ----cUCCAGCCGUGGCCGGCG-CCa -3' miRNA: 3'- guaacAGGUCGGCGCCGGCCGUaGGa -5' |
|||||||
| 28156 | 3' | -59.6 | NC_005887.1 | + | 24672 | 1.07 | 0.000353 |
|
Target: 5'- aCAUUGUCCAGCCGCGGCCGGCAUCCUc -3' miRNA: 3'- -GUAACAGGUCGGCGCCGGCCGUAGGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home