Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28156 | 5' | -51.8 | NC_005887.1 | + | 17901 | 0.67 | 0.759973 |
|
Target: 5'- cGAUGAaGUUCGGCGGCGUcACaggUUGg -3' miRNA: 3'- cCUACUaUAGGUCGCCGCAcUGg--AAC- -5' |
|||||||
| 28156 | 5' | -51.8 | NC_005887.1 | + | 942 | 0.68 | 0.705031 |
|
Target: 5'- --cUGAcucGUCCGGCGGCGcgGGCCa-- -3' miRNA: 3'- ccuACUa--UAGGUCGCCGCa-CUGGaac -5' |
|||||||
| 28156 | 5' | -51.8 | NC_005887.1 | + | 37479 | 0.69 | 0.636673 |
|
Target: 5'- cGGAUGcgAUCagGGCGGCGgucaguuCCUUGa -3' miRNA: 3'- -CCUACuaUAGg-UCGCCGCacu----GGAAC- -5' |
|||||||
| 28156 | 5' | -51.8 | NC_005887.1 | + | 13862 | 0.7 | 0.590846 |
|
Target: 5'- cGGGUuuucGAUGUUC-GCGGCGgUGACCUg- -3' miRNA: 3'- -CCUA----CUAUAGGuCGCCGC-ACUGGAac -5' |
|||||||
| 28156 | 5' | -51.8 | NC_005887.1 | + | 41534 | 0.71 | 0.568117 |
|
Target: 5'- gGGAUGAUgagcagAUCCucgcGCGGCGUG-CCg-- -3' miRNA: 3'- -CCUACUA------UAGGu---CGCCGCACuGGaac -5' |
|||||||
| 28156 | 5' | -51.8 | NC_005887.1 | + | 24707 | 1.1 | 0.0014 |
|
Target: 5'- uGGAUGAUAUCCAGCGGCGUGACCUUGc -3' miRNA: 3'- -CCUACUAUAGGUCGCCGCACUGGAAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home