miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28157 5' -60.5 NC_005887.1 + 30476 0.67 0.344597
Target:  5'- -gCGGUgCGCGACGCGGccCGUGCGu- -3'
miRNA:   3'- caGCUA-GCGCUGCGCCacGCGCGCcc -5'
28157 5' -60.5 NC_005887.1 + 11795 0.67 0.336633
Target:  5'- -gCGugcauUCGUGcGCGCcGUGCGCGCGGc -3'
miRNA:   3'- caGCu----AGCGC-UGCGcCACGCGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 10385 0.68 0.328804
Target:  5'- -aCGAUUGCGGCuCGucauccUGCaGCGCGGGg -3'
miRNA:   3'- caGCUAGCGCUGcGCc-----ACG-CGCGCCC- -5'
28157 5' -60.5 NC_005887.1 + 2517 0.68 0.328804
Target:  5'- cUCG-UCGaCGGCGCcGUaGCGCGCGaGGu -3'
miRNA:   3'- cAGCuAGC-GCUGCGcCA-CGCGCGC-CC- -5'
28157 5' -60.5 NC_005887.1 + 25728 0.68 0.328804
Target:  5'- -aCGAUgGCGACGCGcUGCGgcugGCGGu -3'
miRNA:   3'- caGCUAgCGCUGCGCcACGCg---CGCCc -5'
28157 5' -60.5 NC_005887.1 + 40840 0.68 0.328804
Target:  5'- cUCGAcCGcCGGCuCGGcgGCGCGCGGc -3'
miRNA:   3'- cAGCUaGC-GCUGcGCCa-CGCGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 27110 0.68 0.328804
Target:  5'- aGUCGGgcggcaGCGuGCGCGGUcGCGCGCu-- -3'
miRNA:   3'- -CAGCUag----CGC-UGCGCCA-CGCGCGccc -5'
28157 5' -60.5 NC_005887.1 + 42014 0.68 0.328804
Target:  5'- cGUCGAgugucgcCGCGGCGCGcGaUGCGUacaagGCGGa -3'
miRNA:   3'- -CAGCUa------GCGCUGCGC-C-ACGCG-----CGCCc -5'
28157 5' -60.5 NC_005887.1 + 31381 0.68 0.328804
Target:  5'- cUCGA-CGCGcucggcguaGCGGUGCGUgccgugguucaGCGGGg -3'
miRNA:   3'- cAGCUaGCGCug-------CGCCACGCG-----------CGCCC- -5'
28157 5' -60.5 NC_005887.1 + 10736 0.68 0.328804
Target:  5'- uUCGAUgGCGACauggaauCGGacugGCGCgGCGGGu -3'
miRNA:   3'- cAGCUAgCGCUGc------GCCa---CGCG-CGCCC- -5'
28157 5' -60.5 NC_005887.1 + 14699 0.68 0.328804
Target:  5'- cUCG-UCGCGGCggGCGGgccGgGCGCGGc -3'
miRNA:   3'- cAGCuAGCGCUG--CGCCa--CgCGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 16280 0.68 0.321111
Target:  5'- aUCGAUCGUGACcugcgugucCGGUcGCaGCGCGGc -3'
miRNA:   3'- cAGCUAGCGCUGc--------GCCA-CG-CGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 32734 0.68 0.321111
Target:  5'- -gCGGgguagCGCGGCGCucgcGUGCGCGCcGGc -3'
miRNA:   3'- caGCUa----GCGCUGCGc---CACGCGCGcCC- -5'
28157 5' -60.5 NC_005887.1 + 6857 0.68 0.321111
Target:  5'- uGUCGGaccUCGCGACGuCGGccaaCGCGCaGGc -3'
miRNA:   3'- -CAGCU---AGCGCUGC-GCCac--GCGCGcCC- -5'
28157 5' -60.5 NC_005887.1 + 40207 0.68 0.313553
Target:  5'- -gCGAgCGCGGCGCGcaGCGCGCa-- -3'
miRNA:   3'- caGCUaGCGCUGCGCcaCGCGCGccc -5'
28157 5' -60.5 NC_005887.1 + 14184 0.68 0.30613
Target:  5'- cGUCGAUUGC-ACGCGcUGUcggGCGCGGc -3'
miRNA:   3'- -CAGCUAGCGcUGCGCcACG---CGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 3792 0.68 0.30613
Target:  5'- cGUCcagcuugCGCGGauCGCGGUcgGCGCGCGGc -3'
miRNA:   3'- -CAGcua----GCGCU--GCGCCA--CGCGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 12087 0.68 0.298843
Target:  5'- -aCGGUUGCGA-GCGGcgUGCGUGCGccGGa -3'
miRNA:   3'- caGCUAGCGCUgCGCC--ACGCGCGC--CC- -5'
28157 5' -60.5 NC_005887.1 + 16198 0.68 0.298843
Target:  5'- -gUGGUUgGCGGgGUGGuUGCGCGCGGc -3'
miRNA:   3'- caGCUAG-CGCUgCGCC-ACGCGCGCCc -5'
28157 5' -60.5 NC_005887.1 + 3009 0.68 0.291691
Target:  5'- -aUGGUCGCG--GCGGUGC-CGCGGc -3'
miRNA:   3'- caGCUAGCGCugCGCCACGcGCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.