Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28159 | 5' | -63.7 | NC_005887.1 | + | 13517 | 0.66 | 0.249177 |
Target: 5'- cGCGCCCGucAGgaugaacgUGCUGagcggugcGCCGCuCGUCGc -3' miRNA: 3'- aCGCGGGC--UCa-------GCGAC--------CGGCG-GCAGC- -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 14145 | 0.67 | 0.225434 |
Target: 5'- aUGUGCCCGAGcCGaC-GGUCuauCCGUCGa -3' miRNA: 3'- -ACGCGGGCUCaGC-GaCCGGc--GGCAGC- -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 14497 | 0.66 | 0.259878 |
Target: 5'- cGUGCCCGccgcggugcuugguGGUcCGCUugcaGGCgCGgCCGUCGg -3' miRNA: 3'- aCGCGGGC--------------UCA-GCGA----CCG-GC-GGCAGC- -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 14889 | 0.68 | 0.178985 |
Target: 5'- cGUGCCCGccaucagcGUCGC-GGCCGCCa--- -3' miRNA: 3'- aCGCGGGCu-------CAGCGaCCGGCGGcagc -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 15483 | 0.71 | 0.107929 |
Target: 5'- cGCGUUCGA---GCUGGCCGCgCGUCa -3' miRNA: 3'- aCGCGGGCUcagCGACCGGCG-GCAGc -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 15573 | 0.68 | 0.183694 |
Target: 5'- cGCGCUCGAuUCGCUGaUCGCCGa-- -3' miRNA: 3'- aCGCGGGCUcAGCGACcGGCGGCagc -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 15943 | 0.67 | 0.237057 |
Target: 5'- aGCGCaCCGAGcUGCUGGUgCGCCu--- -3' miRNA: 3'- aCGCG-GGCUCaGCGACCG-GCGGcagc -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 16307 | 0.67 | 0.214299 |
Target: 5'- gGUGCCCGuGcgcUCGCcGGCCGgCGUa- -3' miRNA: 3'- aCGCGGGCuC---AGCGaCCGGCgGCAgc -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 17767 | 0.75 | 0.0563 |
Target: 5'- gGCGCCCGguucgaaggacuuccGGUCG-UGGCUGUCGUCGc -3' miRNA: 3'- aCGCGGGC---------------UCAGCgACCGGCGGCAGC- -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 18464 | 0.66 | 0.266347 |
Target: 5'- gGCGCCgcggcguaggccauCGGGuUCGCgagcgccGGCgCGCCGUCu -3' miRNA: 3'- aCGCGG--------------GCUC-AGCGa------CCG-GCGGCAGc -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 19027 | 0.67 | 0.245489 |
Target: 5'- cGUGCCCu--UCGCagaaucgugcguuauUGGCCGCCGaCGg -3' miRNA: 3'- aCGCGGGcucAGCG---------------ACCGGCGGCaGC- -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 20834 | 0.66 | 0.274949 |
Target: 5'- uUGCGCCaCGuGUCGCaacGuuGCCGgcgCGu -3' miRNA: 3'- -ACGCGG-GCuCAGCGac-CggCGGCa--GC- -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 22941 | 0.69 | 0.161205 |
Target: 5'- aGCGCgCGAGgaucugauaGCggccGGCgGCCGUCGa -3' miRNA: 3'- aCGCGgGCUCag-------CGa---CCGgCGGCAGC- -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 23308 | 0.67 | 0.237057 |
Target: 5'- uUGCGCgCCGAccgccGcCGCUcGCgUGCCGUCGg -3' miRNA: 3'- -ACGCG-GGCU-----CaGCGAcCG-GCGGCAGC- -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 24037 | 0.67 | 0.237057 |
Target: 5'- cGCGCUCGAG-CaGUgGGCCGagguCGUCGg -3' miRNA: 3'- aCGCGGGCUCaG-CGaCCGGCg---GCAGC- -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 24958 | 0.66 | 0.268312 |
Target: 5'- cUGCGaagaagaCCGAGcgCGCggcaucGGCCGCCGcCu -3' miRNA: 3'- -ACGCg------GGCUCa-GCGa-----CCGGCGGCaGc -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 26551 | 0.68 | 0.193441 |
Target: 5'- cGUGCCaCGGugcgguGUCGCU-GCCGUCGUCc -3' miRNA: 3'- aCGCGG-GCU------CAGCGAcCGGCGGCAGc -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 26790 | 0.66 | 0.270951 |
Target: 5'- gUGCGCCCG-GUcuaugucgagcugccCGC-GGCCGCgCGaCGg -3' miRNA: 3'- -ACGCGGGCuCA---------------GCGaCCGGCG-GCaGC- -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 26913 | 1.08 | 0.000141 |
Target: 5'- cUGCGCCCGAGUCGCUGGCCGCCGUCGa -3' miRNA: 3'- -ACGCGGGCUCAGCGACCGGCGGCAGC- -5' |
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28159 | 5' | -63.7 | NC_005887.1 | + | 27215 | 0.67 | 0.20891 |
Target: 5'- cGCGCCCGuGGcCGUUcGGCCGCgUGaUCGc -3' miRNA: 3'- aCGCGGGC-UCaGCGA-CCGGCG-GC-AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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