miRNA display CGI


Results 41 - 60 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 8321 0.67 0.569161
Target:  5'- aUGgacgCGCUGuuucgcgaggcauucGCGUGC-CGUCugGCGGCCg -3'
miRNA:   3'- gACa---GCGAU---------------UGCGCGuGCAG--CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 27654 0.67 0.56476
Target:  5'- gUGcgCGCUGAgcUGcCGCGCG-CGCGGCUu -3'
miRNA:   3'- gACa-GCGAUU--GC-GCGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14626 0.67 0.59795
Target:  5'- -cGUCGagGGCGCGCucACG--GCAGCCg -3'
miRNA:   3'- gaCAGCgaUUGCGCG--UGCagCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 12429 0.67 0.575778
Target:  5'- ---cCGC-GGCGCGCGCGaUCGCgauggacccgAGCCu -3'
miRNA:   3'- gacaGCGaUUGCGCGUGC-AGCG----------UCGG- -5'
28163 5' -55.4 NC_005887.1 + 27337 0.67 0.586845
Target:  5'- -cGUCGacuGCGC-CACG-CGCAGCg -3'
miRNA:   3'- gaCAGCgauUGCGcGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 37775 0.67 0.586845
Target:  5'- -cGUCGUU-GCGCgGCAUGgaaaGCAGCUc -3'
miRNA:   3'- gaCAGCGAuUGCG-CGUGCag--CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 17166 0.67 0.586845
Target:  5'- --aUCGCgaggcgugggAGCGCGCGaa-CGCGGCCg -3'
miRNA:   3'- gacAGCGa---------UUGCGCGUgcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14382 0.67 0.59795
Target:  5'- -aGUCGCcgcucGGCGCGCGCG-CGUAcGaCCu -3'
miRNA:   3'- gaCAGCGa----UUGCGCGUGCaGCGU-C-GG- -5'
28163 5' -55.4 NC_005887.1 + 11106 0.67 0.59795
Target:  5'- --aUCgGCUggUGCGCGCGaaGCuGGCCg -3'
miRNA:   3'- gacAG-CGAuuGCGCGUGCagCG-UCGG- -5'
28163 5' -55.4 NC_005887.1 + 12320 0.67 0.56476
Target:  5'- ---aCGCUGcagcucagcgaACuGCGUACGUCGCucGCCg -3'
miRNA:   3'- gacaGCGAU-----------UG-CGCGUGCAGCGu-CGG- -5'
28163 5' -55.4 NC_005887.1 + 24236 0.67 0.59795
Target:  5'- aUG-CGCUGcuggccACGUGC-CGgcaGCAGCCa -3'
miRNA:   3'- gACaGCGAU------UGCGCGuGCag-CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14690 0.67 0.59795
Target:  5'- gCUGcCGUgAGCGCGCccucgacgGCGcCGaCGGCCg -3'
miRNA:   3'- -GACaGCGaUUGCGCG--------UGCaGC-GUCGG- -5'
28163 5' -55.4 NC_005887.1 + 32737 0.67 0.59795
Target:  5'- -gGUUGCcgaAGCGCGCACG-CGCGacaCCg -3'
miRNA:   3'- gaCAGCGa--UUGCGCGUGCaGCGUc--GG- -5'
28163 5' -55.4 NC_005887.1 + 22608 0.67 0.586845
Target:  5'- aUGUCGau--CGCGgACGgcaugCGCAGCg -3'
miRNA:   3'- gACAGCgauuGCGCgUGCa----GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 30344 0.67 0.586845
Target:  5'- -cGUCGU--GCGCgGCACGaucgUCGC-GCCg -3'
miRNA:   3'- gaCAGCGauUGCG-CGUGC----AGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 4554 0.67 0.585736
Target:  5'- -cG-CGCgauGCGCGCGcCGUUcggcaccuucgcgGCAGCCg -3'
miRNA:   3'- gaCaGCGau-UGCGCGU-GCAG-------------CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 13499 0.67 0.575778
Target:  5'- -cGU-GCUGAgcggUGCGCcgcuCGUCGCAGCa -3'
miRNA:   3'- gaCAgCGAUU----GCGCGu---GCAGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 16199 0.67 0.575778
Target:  5'- -gGUgGUUGGCggggugguuGCGCGCGgCGCAGCg -3'
miRNA:   3'- gaCAgCGAUUG---------CGCGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 1890 0.67 0.569161
Target:  5'- gUGUCGCcgaaGAUGCcguaccaggucggcgGCACGUCcuucggguaGCGGCCg -3'
miRNA:   3'- gACAGCGa---UUGCG---------------CGUGCAG---------CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 10205 0.67 0.565859
Target:  5'- -cGUCGCUccggccggcuucuuCGuCGUACGU-GCAGCCg -3'
miRNA:   3'- gaCAGCGAuu------------GC-GCGUGCAgCGUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.