Results 81 - 100 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 37297 | 0.68 | 0.50009 |
Target: 5'- -cGUCGCgccaGACGguuucgauuCGguCGUCGCAGCa -3' miRNA: 3'- gaCAGCGa---UUGC---------GCguGCAGCGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 17343 | 0.68 | 0.50009 |
Target: 5'- ---aUGCUGACGCGCACa-UGCAGUa -3' miRNA: 3'- gacaGCGAUUGCGCGUGcaGCGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 14701 | 0.68 | 0.51066 |
Target: 5'- -cGUCGCggcgGGCGgGC-CGggCGCGGCg -3' miRNA: 3'- gaCAGCGa---UUGCgCGuGCa-GCGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 15658 | 0.68 | 0.51066 |
Target: 5'- gUGUCGCaGAUGCGCGCcgagcucgaccaGcucaccgccgCGCGGCCg -3' miRNA: 3'- gACAGCGaUUGCGCGUG------------Ca---------GCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 40013 | 0.68 | 0.532071 |
Target: 5'- -cGUCGCggugcgcaucaUGGCGCgGCuCGagGCGGCCg -3' miRNA: 3'- gaCAGCG-----------AUUGCG-CGuGCagCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 13609 | 0.68 | 0.532071 |
Target: 5'- --aUCGCUGcuggcaGCGCgGCGCG-CGgCGGCCg -3' miRNA: 3'- gacAGCGAU------UGCG-CGUGCaGC-GUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 29769 | 0.68 | 0.542898 |
Target: 5'- gCUGaUCGCgagGAuCGC-CGCGUCGCgcagcucgGGCCa -3' miRNA: 3'- -GAC-AGCGa--UU-GCGcGUGCAGCG--------UCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 27606 | 0.68 | 0.542898 |
Target: 5'- -cGUCGUgucgAAgGCGCugauacCGUCGCGGUUg -3' miRNA: 3'- gaCAGCGa---UUgCGCGu-----GCAGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 12696 | 0.68 | 0.489617 |
Target: 5'- -cGUUGCagggucacGCGCGCACGcuggucgCGCAGCa -3' miRNA: 3'- gaCAGCGau------UGCGCGUGCa------GCGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 37397 | 0.68 | 0.489617 |
Target: 5'- ----aGCUGGCGCuGCGCGgUCGCGacuGCCu -3' miRNA: 3'- gacagCGAUUGCG-CGUGC-AGCGU---CGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 17386 | 0.68 | 0.489617 |
Target: 5'- --cUCGCUGuugaACGCGCugGUCgaucacgucgGCGGCa -3' miRNA: 3'- gacAGCGAU----UGCGCGugCAG----------CGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 23662 | 0.68 | 0.51066 |
Target: 5'- -cGUCGgauACGgucaGCGCGUCGUAGUCg -3' miRNA: 3'- gaCAGCgauUGCg---CGUGCAGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 7840 | 0.69 | 0.438905 |
Target: 5'- -gGUCGC-AGCGacaGCACGUCG-AGCa -3' miRNA: 3'- gaCAGCGaUUGCg--CGUGCAGCgUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 29474 | 0.69 | 0.438905 |
Target: 5'- -cGUCGUggAugGacaGCACGaugUCGUAGCCg -3' miRNA: 3'- gaCAGCGa-UugCg--CGUGC---AGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 40271 | 0.69 | 0.438905 |
Target: 5'- gCUGcCGCUGGcCG-GCAaGUCGguGCCg -3' miRNA: 3'- -GACaGCGAUU-GCgCGUgCAGCguCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 9805 | 0.69 | 0.457832 |
Target: 5'- -aGUgGgUGAuugggccCGCGaaCGCGUCGCAGCCg -3' miRNA: 3'- gaCAgCgAUU-------GCGC--GUGCAGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 23550 | 0.69 | 0.45884 |
Target: 5'- -cGUaCGCUGACGcCGCcCGcaUCGCcGGCCg -3' miRNA: 3'- gaCA-GCGAUUGC-GCGuGC--AGCG-UCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 12084 | 0.69 | 0.477187 |
Target: 5'- -cGUCGCUcggucaggucaccGACGUGCugGcCGCGcagaagcGCCa -3' miRNA: 3'- gaCAGCGA-------------UUGCGCGugCaGCGU-------CGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 41956 | 0.69 | 0.479248 |
Target: 5'- gUGcUCGCgugguGCGUGCGCGgcgCGCucGCCu -3' miRNA: 3'- gAC-AGCGau---UGCGCGUGCa--GCGu-CGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 15614 | 0.69 | 0.479248 |
Target: 5'- -gGUCGC--GCGCGCcgaGUCGUcGCCc -3' miRNA: 3'- gaCAGCGauUGCGCGug-CAGCGuCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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