Results 101 - 120 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 2423 | 0.69 | 0.448812 |
Target: 5'- -cGUCGUcGGCcugcgaGCGCugGUCGCccGCCg -3' miRNA: 3'- gaCAGCGaUUG------CGCGugCAGCGu-CGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 29474 | 0.69 | 0.438905 |
Target: 5'- -cGUCGUggAugGacaGCACGaugUCGUAGCCg -3' miRNA: 3'- gaCAGCGa-UugCg--CGUGC---AGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 12084 | 0.69 | 0.477187 |
Target: 5'- -cGUCGCUcggucaggucaccGACGUGCugGcCGCGcagaagcGCCa -3' miRNA: 3'- gaCAGCGA-------------UUGCGCGugCaGCGU-------CGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 23550 | 0.69 | 0.45884 |
Target: 5'- -cGUaCGCUGACGcCGCcCGcaUCGCcGGCCg -3' miRNA: 3'- gaCA-GCGAUUGC-GCGuGC--AGCG-UCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 40271 | 0.69 | 0.438905 |
Target: 5'- gCUGcCGCUGGcCG-GCAaGUCGguGCCg -3' miRNA: 3'- -GACaGCGAUU-GCgCGUgCAGCguCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 7840 | 0.69 | 0.438905 |
Target: 5'- -gGUCGC-AGCGacaGCACGUCG-AGCa -3' miRNA: 3'- gaCAGCGaUUGCg--CGUGCAGCgUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 41956 | 0.69 | 0.479248 |
Target: 5'- gUGcUCGCgugguGCGUGCGCGgcgCGCucGCCu -3' miRNA: 3'- gAC-AGCGau---UGCGCGUGCa--GCGu-CGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 16509 | 0.7 | 0.39133 |
Target: 5'- aUGUCGCaGGC-CGauCGCGUCGCcGCCg -3' miRNA: 3'- gACAGCGaUUGcGC--GUGCAGCGuCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 14026 | 0.7 | 0.419475 |
Target: 5'- ---cCGCcGGCGCGC-CGccggCGCAGCCu -3' miRNA: 3'- gacaGCGaUUGCGCGuGCa---GCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 8710 | 0.7 | 0.39133 |
Target: 5'- -cGcCGCggcgguaaGCGCuuCGUCGCGGCCa -3' miRNA: 3'- gaCaGCGauug----CGCGu-GCAGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 26499 | 0.7 | 0.419475 |
Target: 5'- --cUCGCgcggcuGCaGCGCGCGUucccgCGCGGCCg -3' miRNA: 3'- gacAGCGau----UG-CGCGUGCA-----GCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 28983 | 0.7 | 0.419475 |
Target: 5'- -cGUCGaCgcaaugGGCGCGCGCauccaauUCGUAGCCg -3' miRNA: 3'- gaCAGC-Ga-----UUGCGCGUGc------AGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 28288 | 0.7 | 0.429125 |
Target: 5'- ---aCGCcgAGCGCGCgcaGCGUCGUGGCg -3' miRNA: 3'- gacaGCGa-UUGCGCG---UGCAGCGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 32578 | 0.7 | 0.429125 |
Target: 5'- -aGU-GCgUGACGCGCAUGUuccagugcacgUGCAGCCc -3' miRNA: 3'- gaCAgCG-AUUGCGCGUGCA-----------GCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 34570 | 0.7 | 0.419475 |
Target: 5'- aUGUCGaucguCGCGUucACGUaGCAGCCg -3' miRNA: 3'- gACAGCgauu-GCGCG--UGCAgCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 40760 | 0.7 | 0.382226 |
Target: 5'- -cGcCGUUGGCGCGcCGCG-CGCcGCCg -3' miRNA: 3'- gaCaGCGAUUGCGC-GUGCaGCGuCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 41544 | 0.7 | 0.419475 |
Target: 5'- -aGgCGCUcGGCGCGCACG-CGaaguCAGCCa -3' miRNA: 3'- gaCaGCGA-UUGCGCGUGCaGC----GUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 30203 | 0.7 | 0.409957 |
Target: 5'- --cUCGCcggccagccACGC-CGCGUCGCGGCCu -3' miRNA: 3'- gacAGCGau-------UGCGcGUGCAGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 30285 | 0.7 | 0.39133 |
Target: 5'- --aUCGUgc-CGCGCACGacguUCGCAGUCa -3' miRNA: 3'- gacAGCGauuGCGCGUGC----AGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 14184 | 0.7 | 0.419475 |
Target: 5'- -cGUCGaUUGcACGCGCuguCGggCGCGGCCu -3' miRNA: 3'- gaCAGC-GAU-UGCGCGu--GCa-GCGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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