Results 21 - 40 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 12670 | 0.71 | 0.355773 |
Target: 5'- uCUG-CGUcAGCaCGCcgaGCGUCGCGGCCg -3' miRNA: 3'- -GACaGCGaUUGcGCG---UGCAGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 16602 | 0.71 | 0.346402 |
Target: 5'- -aGUUGCUGACGCGCccacucgGCGcCgGCGGCg -3' miRNA: 3'- gaCAGCGAUUGCGCG-------UGCaG-CGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 30793 | 0.71 | 0.373264 |
Target: 5'- uCUGcgCGCgaucaaUGGCGCGCAC--CGCGGCCu -3' miRNA: 3'- -GACa-GCG------AUUGCGCGUGcaGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 24935 | 0.71 | 0.347246 |
Target: 5'- uUGUCGaucgcGACGCGUGCG-CGCgGGCCg -3' miRNA: 3'- gACAGCga---UUGCGCGUGCaGCG-UCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 8082 | 0.71 | 0.373264 |
Target: 5'- -gGUCGUUcACgaaaGCGCGCG-CGCAGCUc -3' miRNA: 3'- gaCAGCGAuUG----CGCGUGCaGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 26833 | 0.71 | 0.373264 |
Target: 5'- -cGUgCGCgAGCGgGCGCGUCugccgGUAGCCg -3' miRNA: 3'- gaCA-GCGaUUGCgCGUGCAG-----CGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 28475 | 0.71 | 0.346402 |
Target: 5'- cCUGcgcgCGCUcggcugcGACGUGCGCGUgaCGaCAGCCg -3' miRNA: 3'- -GACa---GCGA-------UUGCGCGUGCA--GC-GUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 28983 | 0.7 | 0.419475 |
Target: 5'- -cGUCGaCgcaaugGGCGCGCGCauccaauUCGUAGCCg -3' miRNA: 3'- gaCAGC-Ga-----UUGCGCGUGc------AGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 12491 | 0.7 | 0.39133 |
Target: 5'- --aUCGCgauCGCGCGCG-CGCGGUg -3' miRNA: 3'- gacAGCGauuGCGCGUGCaGCGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 30285 | 0.7 | 0.39133 |
Target: 5'- --aUCGUgc-CGCGCACGacguUCGCAGUCa -3' miRNA: 3'- gacAGCGauuGCGCGUGC----AGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 12173 | 0.7 | 0.382226 |
Target: 5'- cCUGgCGCUucuGCGCggccaGCACGUCGguGaCCu -3' miRNA: 3'- -GACaGCGAu--UGCG-----CGUGCAGCguC-GG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 41544 | 0.7 | 0.419475 |
Target: 5'- -aGgCGCUcGGCGCGCACG-CGaaguCAGCCa -3' miRNA: 3'- gaCaGCGA-UUGCGCGUGCaGC----GUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 40760 | 0.7 | 0.382226 |
Target: 5'- -cGcCGUUGGCGCGcCGCG-CGCcGCCg -3' miRNA: 3'- gaCaGCGAUUGCGC-GUGCaGCGuCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 16509 | 0.7 | 0.39133 |
Target: 5'- aUGUCGCaGGC-CGauCGCGUCGCcGCCg -3' miRNA: 3'- gACAGCGaUUGcGC--GUGCAGCGuCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 30203 | 0.7 | 0.409957 |
Target: 5'- --cUCGCcggccagccACGC-CGCGUCGCGGCCu -3' miRNA: 3'- gacAGCGau-------UGCGcGUGCAGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 28288 | 0.7 | 0.429125 |
Target: 5'- ---aCGCcgAGCGCGCgcaGCGUCGUGGCg -3' miRNA: 3'- gacaGCGa-UUGCGCG---UGCAGCGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 32578 | 0.7 | 0.429125 |
Target: 5'- -aGU-GCgUGACGCGCAUGUuccagugcacgUGCAGCCc -3' miRNA: 3'- gaCAgCG-AUUGCGCGUGCA-----------GCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 34570 | 0.7 | 0.419475 |
Target: 5'- aUGUCGaucguCGCGUucACGUaGCAGCCg -3' miRNA: 3'- gACAGCgauu-GCGCG--UGCAgCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 14184 | 0.7 | 0.419475 |
Target: 5'- -cGUCGaUUGcACGCGCuguCGggCGCGGCCu -3' miRNA: 3'- gaCAGC-GAU-UGCGCGu--GCa-GCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 14026 | 0.7 | 0.419475 |
Target: 5'- ---cCGCcGGCGCGC-CGccggCGCAGCCu -3' miRNA: 3'- gacaGCGaUUGCGCGuGCa---GCGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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