miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 40760 0.7 0.382226
Target:  5'- -cGcCGUUGGCGCGcCGCG-CGCcGCCg -3'
miRNA:   3'- gaCaGCGAUUGCGC-GUGCaGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 28288 0.7 0.429125
Target:  5'- ---aCGCcgAGCGCGCgcaGCGUCGUGGCg -3'
miRNA:   3'- gacaGCGa-UUGCGCG---UGCAGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 40271 0.69 0.438905
Target:  5'- gCUGcCGCUGGcCG-GCAaGUCGguGCCg -3'
miRNA:   3'- -GACaGCGAUU-GCgCGUgCAGCguCGG- -5'
28163 5' -55.4 NC_005887.1 + 9805 0.69 0.457832
Target:  5'- -aGUgGgUGAuugggccCGCGaaCGCGUCGCAGCCg -3'
miRNA:   3'- gaCAgCgAUU-------GCGC--GUGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 7840 0.69 0.438905
Target:  5'- -gGUCGC-AGCGacaGCACGUCG-AGCa -3'
miRNA:   3'- gaCAGCGaUUGCg--CGUGCAGCgUCGg -5'
28163 5' -55.4 NC_005887.1 + 23550 0.69 0.45884
Target:  5'- -cGUaCGCUGACGcCGCcCGcaUCGCcGGCCg -3'
miRNA:   3'- gaCA-GCGAUUGC-GCGuGC--AGCG-UCGG- -5'
28163 5' -55.4 NC_005887.1 + 12084 0.69 0.477187
Target:  5'- -cGUCGCUcggucaggucaccGACGUGCugGcCGCGcagaagcGCCa -3'
miRNA:   3'- gaCAGCGA-------------UUGCGCGugCaGCGU-------CGG- -5'
28163 5' -55.4 NC_005887.1 + 41956 0.69 0.479248
Target:  5'- gUGcUCGCgugguGCGUGCGCGgcgCGCucGCCu -3'
miRNA:   3'- gAC-AGCGau---UGCGCGUGCa--GCGu-CGG- -5'
28163 5' -55.4 NC_005887.1 + 29474 0.69 0.438905
Target:  5'- -cGUCGUggAugGacaGCACGaugUCGUAGCCg -3'
miRNA:   3'- gaCAGCGa-UugCg--CGUGC---AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 13228 0.69 0.468987
Target:  5'- ---cCGCUGucUGCGCGCG-CGCGGCa -3'
miRNA:   3'- gacaGCGAUu-GCGCGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 4830 0.69 0.468987
Target:  5'- -cGUCaGCUuccCGCGCuCGUCGCAaaagcaccGCCg -3'
miRNA:   3'- gaCAG-CGAuu-GCGCGuGCAGCGU--------CGG- -5'
28163 5' -55.4 NC_005887.1 + 1069 0.69 0.468987
Target:  5'- gUGUacaGC--GCGCGCACG--GCGGCCg -3'
miRNA:   3'- gACAg--CGauUGCGCGUGCagCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 7895 0.69 0.448812
Target:  5'- gCUGUCGCUGcgaccACGgGCuuuUGggccCGUAGCCg -3'
miRNA:   3'- -GACAGCGAU-----UGCgCGu--GCa---GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 15614 0.69 0.479248
Target:  5'- -gGUCGC--GCGCGCcgaGUCGUcGCCc -3'
miRNA:   3'- gaCAGCGauUGCGCGug-CAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 2423 0.69 0.448812
Target:  5'- -cGUCGUcGGCcugcgaGCGCugGUCGCccGCCg -3'
miRNA:   3'- gaCAGCGaUUG------CGCGugCAGCGu-CGG- -5'
28163 5' -55.4 NC_005887.1 + 11801 0.69 0.45884
Target:  5'- gCUGUUGCgugcauucguGCGCGCcguGCG-CGCGGCg -3'
miRNA:   3'- -GACAGCGau--------UGCGCG---UGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 3828 0.69 0.45884
Target:  5'- -cGUCGagccaguacGACGCgaacuGCAUGUUGCGGCCg -3'
miRNA:   3'- gaCAGCga-------UUGCG-----CGUGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 27410 0.68 0.521323
Target:  5'- uCUG-CGCgc-CGCuGCGCGUggCGCAGUCg -3'
miRNA:   3'- -GACaGCGauuGCG-CGUGCA--GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 12918 0.68 0.51066
Target:  5'- -gGUCGUgccuucCGUGUugGUCaGCAGCUg -3'
miRNA:   3'- gaCAGCGauu---GCGCGugCAG-CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 28359 0.68 0.51066
Target:  5'- -aGUCGCcacGACGCuGCGCG-CGCucggcguGCCg -3'
miRNA:   3'- gaCAGCGa--UUGCG-CGUGCaGCGu------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.