miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 379 0.68 0.542898
Target:  5'- --cUCGgUGuACGCGCGCacCGCGGCCu -3'
miRNA:   3'- gacAGCgAU-UGCGCGUGcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 1211 0.68 0.542898
Target:  5'- -cGUCagaucCUucACGCGCACG-CGCGGCUu -3'
miRNA:   3'- gaCAGc----GAu-UGCGCGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 11385 0.68 0.532071
Target:  5'- -cGUCGCgguuGCG-GCGC-UCGCuGCCg -3'
miRNA:   3'- gaCAGCGau--UGCgCGUGcAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 23596 0.68 0.521323
Target:  5'- -cGUaCGCUGccagcucacccGCGCGUuCGUCagcGCGGCCg -3'
miRNA:   3'- gaCA-GCGAU-----------UGCGCGuGCAG---CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 4709 0.68 0.50009
Target:  5'- -cGUCGCUGAgauccuugauCGCGCcggcggccaccgGCGcCGCGGCg -3'
miRNA:   3'- gaCAGCGAUU----------GCGCG------------UGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 40940 0.68 0.489617
Target:  5'- -cGUCGCguuucuucuucGACGCGCGCG--GCGGCUu -3'
miRNA:   3'- gaCAGCGa----------UUGCGCGUGCagCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 39992 0.68 0.489617
Target:  5'- -cGUCGUcGACGCGCcCGgcucgaucugCGCGGCa -3'
miRNA:   3'- gaCAGCGaUUGCGCGuGCa---------GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 37297 0.68 0.50009
Target:  5'- -cGUCGCgccaGACGguuucgauuCGguCGUCGCAGCa -3'
miRNA:   3'- gaCAGCGa---UUGC---------GCguGCAGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 27606 0.68 0.542898
Target:  5'- -cGUCGUgucgAAgGCGCugauacCGUCGCGGUUg -3'
miRNA:   3'- gaCAGCGa---UUgCGCGu-----GCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 29769 0.68 0.542898
Target:  5'- gCUGaUCGCgagGAuCGC-CGCGUCGCgcagcucgGGCCa -3'
miRNA:   3'- -GAC-AGCGa--UU-GCGcGUGCAGCG--------UCGG- -5'
28163 5' -55.4 NC_005887.1 + 13609 0.68 0.532071
Target:  5'- --aUCGCUGcuggcaGCGCgGCGCG-CGgCGGCCg -3'
miRNA:   3'- gacAGCGAU------UGCG-CGUGCaGC-GUCGG- -5'
28163 5' -55.4 NC_005887.1 + 40013 0.68 0.532071
Target:  5'- -cGUCGCggugcgcaucaUGGCGCgGCuCGagGCGGCCg -3'
miRNA:   3'- gaCAGCG-----------AUUGCG-CGuGCagCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14829 0.68 0.521323
Target:  5'- -cGaCGCUGaugGCGgGCACGuUCGCGGgCg -3'
miRNA:   3'- gaCaGCGAU---UGCgCGUGC-AGCGUCgG- -5'
28163 5' -55.4 NC_005887.1 + 15658 0.68 0.51066
Target:  5'- gUGUCGCaGAUGCGCGCcgagcucgaccaGcucaccgccgCGCGGCCg -3'
miRNA:   3'- gACAGCGaUUGCGCGUG------------Ca---------GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14701 0.68 0.51066
Target:  5'- -cGUCGCggcgGGCGgGC-CGggCGCGGCg -3'
miRNA:   3'- gaCAGCGa---UUGCgCGuGCa-GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 17343 0.68 0.50009
Target:  5'- ---aUGCUGACGCGCACa-UGCAGUa -3'
miRNA:   3'- gacaGCGAUUGCGCGUGcaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 30456 0.68 0.50009
Target:  5'- aUGUUGCcgGGCuggaacaggcgGUGCGCGaCGCGGCCc -3'
miRNA:   3'- gACAGCGa-UUG-----------CGCGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 21673 0.68 0.50009
Target:  5'- gUGUCGCUGACGU-CGgGg-GCAGCUg -3'
miRNA:   3'- gACAGCGAUUGCGcGUgCagCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 23662 0.68 0.51066
Target:  5'- -cGUCGgauACGgucaGCGCGUCGUAGUCg -3'
miRNA:   3'- gaCAGCgauUGCg---CGUGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 17386 0.68 0.489617
Target:  5'- --cUCGCUGuugaACGCGCugGUCgaucacgucgGCGGCa -3'
miRNA:   3'- gacAGCGAU----UGCGCGugCAG----------CGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.