miRNA display CGI


Results 81 - 100 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 40013 0.68 0.532071
Target:  5'- -cGUCGCggugcgcaucaUGGCGCgGCuCGagGCGGCCg -3'
miRNA:   3'- gaCAGCG-----------AUUGCG-CGuGCagCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14829 0.68 0.521323
Target:  5'- -cGaCGCUGaugGCGgGCACGuUCGCGGgCg -3'
miRNA:   3'- gaCaGCGAU---UGCgCGUGC-AGCGUCgG- -5'
28163 5' -55.4 NC_005887.1 + 15658 0.68 0.51066
Target:  5'- gUGUCGCaGAUGCGCGCcgagcucgaccaGcucaccgccgCGCGGCCg -3'
miRNA:   3'- gACAGCGaUUGCGCGUG------------Ca---------GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14701 0.68 0.51066
Target:  5'- -cGUCGCggcgGGCGgGC-CGggCGCGGCg -3'
miRNA:   3'- gaCAGCGa---UUGCgCGuGCa-GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 17343 0.68 0.50009
Target:  5'- ---aUGCUGACGCGCACa-UGCAGUa -3'
miRNA:   3'- gacaGCGAUUGCGCGUGcaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 27654 0.67 0.56476
Target:  5'- gUGcgCGCUGAgcUGcCGCGCG-CGCGGCUu -3'
miRNA:   3'- gACa-GCGAUU--GC-GCGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 37775 0.67 0.586845
Target:  5'- -cGUCGUU-GCGCgGCAUGgaaaGCAGCUc -3'
miRNA:   3'- gaCAGCGAuUGCG-CGUGCag--CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 27337 0.67 0.586845
Target:  5'- -cGUCGacuGCGC-CACG-CGCAGCg -3'
miRNA:   3'- gaCAGCgauUGCGcGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 12429 0.67 0.575778
Target:  5'- ---cCGC-GGCGCGCGCGaUCGCgauggacccgAGCCu -3'
miRNA:   3'- gacaGCGaUUGCGCGUGC-AGCG----------UCGG- -5'
28163 5' -55.4 NC_005887.1 + 8321 0.67 0.569161
Target:  5'- aUGgacgCGCUGuuucgcgaggcauucGCGUGC-CGUCugGCGGCCg -3'
miRNA:   3'- gACa---GCGAU---------------UGCGCGuGCAG--CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 20959 0.67 0.575778
Target:  5'- uUGcUCGCUGuuccCGCGCugG-CGCuuggcGCCa -3'
miRNA:   3'- gAC-AGCGAUu---GCGCGugCaGCGu----CGG- -5'
28163 5' -55.4 NC_005887.1 + 17166 0.67 0.586845
Target:  5'- --aUCGCgaggcgugggAGCGCGCGaa-CGCGGCCg -3'
miRNA:   3'- gacAGCGa---------UUGCGCGUgcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14382 0.67 0.59795
Target:  5'- -aGUCGCcgcucGGCGCGCGCG-CGUAcGaCCu -3'
miRNA:   3'- gaCAGCGa----UUGCGCGUGCaGCGU-C-GG- -5'
28163 5' -55.4 NC_005887.1 + 11106 0.67 0.59795
Target:  5'- --aUCgGCUggUGCGCGCGaaGCuGGCCg -3'
miRNA:   3'- gacAG-CGAuuGCGCGUGCagCG-UCGG- -5'
28163 5' -55.4 NC_005887.1 + 14626 0.67 0.59795
Target:  5'- -cGUCGagGGCGCGCucACG--GCAGCCg -3'
miRNA:   3'- gaCAGCgaUUGCGCG--UGCagCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 24236 0.67 0.59795
Target:  5'- aUG-CGCUGcuggccACGUGC-CGgcaGCAGCCa -3'
miRNA:   3'- gACaGCGAU------UGCGCGuGCag-CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 12320 0.67 0.56476
Target:  5'- ---aCGCUGcagcucagcgaACuGCGUACGUCGCucGCCg -3'
miRNA:   3'- gacaGCGAU-----------UG-CGCGUGCAGCGu-CGG- -5'
28163 5' -55.4 NC_005887.1 + 15459 0.67 0.56476
Target:  5'- ---cCGCUGccCGCGCGCGaucagCGCGGCg -3'
miRNA:   3'- gacaGCGAUu-GCGCGUGCa----GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 3313 0.67 0.553797
Target:  5'- -aGUUGCgcaGCGCGaGCGgCGCGGUCg -3'
miRNA:   3'- gaCAGCGau-UGCGCgUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 8449 0.67 0.553797
Target:  5'- uUGUCGCUucguCGCGCucuGCGucaggcuuUCGCAGgCu -3'
miRNA:   3'- gACAGCGAuu--GCGCG---UGC--------AGCGUCgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.