miRNA display CGI


Results 81 - 100 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 1211 0.68 0.542898
Target:  5'- -cGUCagaucCUucACGCGCACG-CGCGGCUu -3'
miRNA:   3'- gaCAGc----GAu-UGCGCGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 27606 0.68 0.542898
Target:  5'- -cGUCGUgucgAAgGCGCugauacCGUCGCGGUUg -3'
miRNA:   3'- gaCAGCGa---UUgCGCGu-----GCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 379 0.68 0.542898
Target:  5'- --cUCGgUGuACGCGCGCacCGCGGCCu -3'
miRNA:   3'- gacAGCgAU-UGCGCGUGcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 32816 0.68 0.542898
Target:  5'- aUGgcgCGCgccGGCGCGCACG-CGagcGCCg -3'
miRNA:   3'- gACa--GCGa--UUGCGCGUGCaGCgu-CGG- -5'
28163 5' -55.4 NC_005887.1 + 40688 0.68 0.542898
Target:  5'- cCUGgCGC--GCGCGCACGgcuggcaGgAGCCg -3'
miRNA:   3'- -GACaGCGauUGCGCGUGCag-----CgUCGG- -5'
28163 5' -55.4 NC_005887.1 + 8949 0.67 0.550521
Target:  5'- -gGUcCGCgAGCGCGUacgGCGUCGCGaucucgacgggcgcGCCg -3'
miRNA:   3'- gaCA-GCGaUUGCGCG---UGCAGCGU--------------CGG- -5'
28163 5' -55.4 NC_005887.1 + 3313 0.67 0.553797
Target:  5'- -aGUUGCgcaGCGCGaGCGgCGCGGUCg -3'
miRNA:   3'- gaCAGCGau-UGCGCgUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 8449 0.67 0.553797
Target:  5'- uUGUCGCUucguCGCGCucuGCGucaggcuuUCGCAGgCu -3'
miRNA:   3'- gACAGCGAuu--GCGCG---UGC--------AGCGUCgG- -5'
28163 5' -55.4 NC_005887.1 + 27654 0.67 0.56476
Target:  5'- gUGcgCGCUGAgcUGcCGCGCG-CGCGGCUu -3'
miRNA:   3'- gACa-GCGAUU--GC-GCGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 12320 0.67 0.56476
Target:  5'- ---aCGCUGcagcucagcgaACuGCGUACGUCGCucGCCg -3'
miRNA:   3'- gacaGCGAU-----------UG-CGCGUGCAGCGu-CGG- -5'
28163 5' -55.4 NC_005887.1 + 15459 0.67 0.56476
Target:  5'- ---cCGCUGccCGCGCGCGaucagCGCGGCg -3'
miRNA:   3'- gacaGCGAUu-GCGCGUGCa----GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 10205 0.67 0.565859
Target:  5'- -cGUCGCUccggccggcuucuuCGuCGUACGU-GCAGCCg -3'
miRNA:   3'- gaCAGCGAuu------------GC-GCGUGCAgCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 1890 0.67 0.569161
Target:  5'- gUGUCGCcgaaGAUGCcguaccaggucggcgGCACGUCcuucggguaGCGGCCg -3'
miRNA:   3'- gACAGCGa---UUGCG---------------CGUGCAG---------CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 8321 0.67 0.569161
Target:  5'- aUGgacgCGCUGuuucgcgaggcauucGCGUGC-CGUCugGCGGCCg -3'
miRNA:   3'- gACa---GCGAU---------------UGCGCGuGCAG--CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 12429 0.67 0.575778
Target:  5'- ---cCGC-GGCGCGCGCGaUCGCgauggacccgAGCCu -3'
miRNA:   3'- gacaGCGaUUGCGCGUGC-AGCG----------UCGG- -5'
28163 5' -55.4 NC_005887.1 + 20959 0.67 0.575778
Target:  5'- uUGcUCGCUGuuccCGCGCugG-CGCuuggcGCCa -3'
miRNA:   3'- gAC-AGCGAUu---GCGCGugCaGCGu----CGG- -5'
28163 5' -55.4 NC_005887.1 + 13499 0.67 0.575778
Target:  5'- -cGU-GCUGAgcggUGCGCcgcuCGUCGCAGCa -3'
miRNA:   3'- gaCAgCGAUU----GCGCGu---GCAGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 16199 0.67 0.575778
Target:  5'- -gGUgGUUGGCggggugguuGCGCGCGgCGCAGCg -3'
miRNA:   3'- gaCAgCGAUUG---------CGCGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 4554 0.67 0.585736
Target:  5'- -cG-CGCgauGCGCGCGcCGUUcggcaccuucgcgGCAGCCg -3'
miRNA:   3'- gaCaGCGau-UGCGCGU-GCAG-------------CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 27337 0.67 0.586845
Target:  5'- -cGUCGacuGCGC-CACG-CGCAGCg -3'
miRNA:   3'- gaCAGCgauUGCGcGUGCaGCGUCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.