miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 11801 0.69 0.45884
Target:  5'- gCUGUUGCgugcauucguGCGCGCcguGCG-CGCGGCg -3'
miRNA:   3'- -GACAGCGau--------UGCGCG---UGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 12084 0.69 0.477187
Target:  5'- -cGUCGCUcggucaggucaccGACGUGCugGcCGCGcagaagcGCCa -3'
miRNA:   3'- gaCAGCGA-------------UUGCGCGugCaGCGU-------CGG- -5'
28163 5' -55.4 NC_005887.1 + 12173 0.7 0.382226
Target:  5'- cCUGgCGCUucuGCGCggccaGCACGUCGguGaCCu -3'
miRNA:   3'- -GACaGCGAu--UGCG-----CGUGCAGCguC-GG- -5'
28163 5' -55.4 NC_005887.1 + 12320 0.67 0.56476
Target:  5'- ---aCGCUGcagcucagcgaACuGCGUACGUCGCucGCCg -3'
miRNA:   3'- gacaGCGAU-----------UG-CGCGUGCAGCGu-CGG- -5'
28163 5' -55.4 NC_005887.1 + 12429 0.67 0.575778
Target:  5'- ---cCGC-GGCGCGCGCGaUCGCgauggacccgAGCCu -3'
miRNA:   3'- gacaGCGaUUGCGCGUGC-AGCG----------UCGG- -5'
28163 5' -55.4 NC_005887.1 + 12491 0.7 0.39133
Target:  5'- --aUCGCgauCGCGCGCG-CGCGGUg -3'
miRNA:   3'- gacAGCGauuGCGCGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 12670 0.71 0.355773
Target:  5'- uCUG-CGUcAGCaCGCcgaGCGUCGCGGCCg -3'
miRNA:   3'- -GACaGCGaUUGcGCG---UGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 12696 0.68 0.489617
Target:  5'- -cGUUGCagggucacGCGCGCACGcuggucgCGCAGCa -3'
miRNA:   3'- gaCAGCGau------UGCGCGUGCa------GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 12918 0.68 0.51066
Target:  5'- -gGUCGUgccuucCGUGUugGUCaGCAGCUg -3'
miRNA:   3'- gaCAGCGauu---GCGCGugCAG-CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 13157 0.75 0.207386
Target:  5'- -cGUCGCUugcCGCGCGCG-CGCAGaCa -3'
miRNA:   3'- gaCAGCGAuu-GCGCGUGCaGCGUCgG- -5'
28163 5' -55.4 NC_005887.1 + 13228 0.69 0.468987
Target:  5'- ---cCGCUGucUGCGCGCG-CGCGGCa -3'
miRNA:   3'- gacaGCGAUu-GCGCGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 13499 0.67 0.575778
Target:  5'- -cGU-GCUGAgcggUGCGCcgcuCGUCGCAGCa -3'
miRNA:   3'- gaCAgCGAUU----GCGCGu---GCAGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 13609 0.68 0.532071
Target:  5'- --aUCGCUGcuggcaGCGCgGCGCG-CGgCGGCCg -3'
miRNA:   3'- gacAGCGAU------UGCG-CGUGCaGC-GUCGG- -5'
28163 5' -55.4 NC_005887.1 + 13725 0.72 0.30683
Target:  5'- -cGcCGCUGAuCGCguucuGCACGUCGguGCUg -3'
miRNA:   3'- gaCaGCGAUU-GCG-----CGUGCAGCguCGG- -5'
28163 5' -55.4 NC_005887.1 + 14026 0.7 0.419475
Target:  5'- ---cCGCcGGCGCGC-CGccggCGCAGCCu -3'
miRNA:   3'- gacaGCGaUUGCGCGuGCa---GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14184 0.7 0.419475
Target:  5'- -cGUCGaUUGcACGCGCuguCGggCGCGGCCu -3'
miRNA:   3'- gaCAGC-GAU-UGCGCGu--GCa-GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14382 0.67 0.59795
Target:  5'- -aGUCGCcgcucGGCGCGCGCG-CGUAcGaCCu -3'
miRNA:   3'- gaCAGCGa----UUGCGCGUGCaGCGU-C-GG- -5'
28163 5' -55.4 NC_005887.1 + 14453 0.72 0.314616
Target:  5'- -gGUCGUacGCGCGCGCGccgaGCGGCg -3'
miRNA:   3'- gaCAGCGauUGCGCGUGCag--CGUCGg -5'
28163 5' -55.4 NC_005887.1 + 14495 0.66 0.631409
Target:  5'- --aUCGCgguUGCGCGCGUCGgGuCCg -3'
miRNA:   3'- gacAGCGauuGCGCGUGCAGCgUcGG- -5'
28163 5' -55.4 NC_005887.1 + 14626 0.67 0.59795
Target:  5'- -cGUCGagGGCGCGCucACG--GCAGCCg -3'
miRNA:   3'- gaCAGCgaUUGCGCG--UGCagCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.