miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 14690 0.67 0.59795
Target:  5'- gCUGcCGUgAGCGCGCccucgacgGCGcCGaCGGCCg -3'
miRNA:   3'- -GACaGCGaUUGCGCG--------UGCaGC-GUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14701 0.68 0.51066
Target:  5'- -cGUCGCggcgGGCGgGC-CGggCGCGGCg -3'
miRNA:   3'- gaCAGCGa---UUGCgCGuGCa-GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 14829 0.68 0.521323
Target:  5'- -cGaCGCUGaugGCGgGCACGuUCGCGGgCg -3'
miRNA:   3'- gaCaGCGAU---UGCgCGUGC-AGCGUCgG- -5'
28163 5' -55.4 NC_005887.1 + 14896 0.74 0.23082
Target:  5'- ---cCGCgAACGUGCccgccaucaGCGUCGCGGCCg -3'
miRNA:   3'- gacaGCGaUUGCGCG---------UGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 15393 0.72 0.322551
Target:  5'- -cG-CGCUGAuCGCGCGCGg-GCAGCg -3'
miRNA:   3'- gaCaGCGAUU-GCGCGUGCagCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 15459 0.67 0.56476
Target:  5'- ---cCGCUGccCGCGCGCGaucagCGCGGCg -3'
miRNA:   3'- gacaGCGAUu-GCGCGUGCa----GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 15614 0.69 0.479248
Target:  5'- -gGUCGC--GCGCGCcgaGUCGUcGCCc -3'
miRNA:   3'- gaCAGCGauUGCGCGug-CAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 15658 0.68 0.51066
Target:  5'- gUGUCGCaGAUGCGCGCcgagcucgaccaGcucaccgccgCGCGGCCg -3'
miRNA:   3'- gACAGCGaUUGCGCGUG------------Ca---------GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 15991 0.75 0.213045
Target:  5'- aUGUCGUgcGCGCGCAgaccCGcCGCgAGCCg -3'
miRNA:   3'- gACAGCGauUGCGCGU----GCaGCG-UCGG- -5'
28163 5' -55.4 NC_005887.1 + 16199 0.67 0.575778
Target:  5'- -gGUgGUUGGCggggugguuGCGCGCGgCGCAGCg -3'
miRNA:   3'- gaCAgCGAUUG---------CGCGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 16509 0.7 0.39133
Target:  5'- aUGUCGCaGGC-CGauCGCGUCGCcGCCg -3'
miRNA:   3'- gACAGCGaUUGcGC--GUGCAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 16602 0.71 0.346402
Target:  5'- -aGUUGCUGACGCGCccacucgGCGcCgGCGGCg -3'
miRNA:   3'- gaCAGCGAUUGCGCG-------UGCaG-CGUCGg -5'
28163 5' -55.4 NC_005887.1 + 17166 0.67 0.586845
Target:  5'- --aUCGCgaggcgugggAGCGCGCGaa-CGCGGCCg -3'
miRNA:   3'- gacAGCGa---------UUGCGCGUgcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 17343 0.68 0.50009
Target:  5'- ---aUGCUGACGCGCACa-UGCAGUa -3'
miRNA:   3'- gacaGCGAUUGCGCGUGcaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 17354 0.68 0.489617
Target:  5'- -cGgCGUUuGCGCGCGCGgCGCcGCCc -3'
miRNA:   3'- gaCaGCGAuUGCGCGUGCaGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 17386 0.68 0.489617
Target:  5'- --cUCGCUGuugaACGCGCugGUCgaucacgucgGCGGCa -3'
miRNA:   3'- gacAGCGAU----UGCGCGugCAG----------CGUCGg -5'
28163 5' -55.4 NC_005887.1 + 17955 0.66 0.663758
Target:  5'- -aGUCGCacauAUGCGCGgGcUCGCcggcaucGGCCg -3'
miRNA:   3'- gaCAGCGau--UGCGCGUgC-AGCG-------UCGG- -5'
28163 5' -55.4 NC_005887.1 + 18409 0.72 0.291701
Target:  5'- -aGUCGCccgAACGuCGCAUGUCGCcgaugcGCCc -3'
miRNA:   3'- gaCAGCGa--UUGC-GCGUGCAGCGu-----CGG- -5'
28163 5' -55.4 NC_005887.1 + 18642 0.66 0.664871
Target:  5'- aCUGgaaCGCcgcGACGaGCAUGUCGCccgcgaAGCCg -3'
miRNA:   3'- -GACa--GCGa--UUGCgCGUGCAGCG------UCGG- -5'
28163 5' -55.4 NC_005887.1 + 20959 0.67 0.575778
Target:  5'- uUGcUCGCUGuuccCGCGCugG-CGCuuggcGCCa -3'
miRNA:   3'- gAC-AGCGAUu---GCGCGugCaGCGu----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.