miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 28983 0.7 0.419475
Target:  5'- -cGUCGaCgcaaugGGCGCGCGCauccaauUCGUAGCCg -3'
miRNA:   3'- gaCAGC-Ga-----UUGCGCGUGc------AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 28571 0.66 0.631409
Target:  5'- -cGUCGCcgccCGCuGCGCGgaCGCGGUCg -3'
miRNA:   3'- gaCAGCGauu-GCG-CGUGCa-GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 28475 0.71 0.346402
Target:  5'- cCUGcgcgCGCUcggcugcGACGUGCGCGUgaCGaCAGCCg -3'
miRNA:   3'- -GACa---GCGA-------UUGCGCGUGCA--GC-GUCGG- -5'
28163 5' -55.4 NC_005887.1 + 28395 0.96 0.006844
Target:  5'- gCUGUCGaucACGCGCACGUCGCAGCCg -3'
miRNA:   3'- -GACAGCgauUGCGCGUGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 28359 0.68 0.51066
Target:  5'- -aGUCGCcacGACGCuGCGCG-CGCucggcguGCCg -3'
miRNA:   3'- gaCAGCGa--UUGCG-CGUGCaGCGu------CGG- -5'
28163 5' -55.4 NC_005887.1 + 28288 0.7 0.429125
Target:  5'- ---aCGCcgAGCGCGCgcaGCGUCGUGGCg -3'
miRNA:   3'- gacaGCGa-UUGCGCG---UGCAGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 28194 0.66 0.664871
Target:  5'- gCUGUgCGCcgcaucAGCGcCGCGCGUCuCGGCg -3'
miRNA:   3'- -GACA-GCGa-----UUGC-GCGUGCAGcGUCGg -5'
28163 5' -55.4 NC_005887.1 + 27654 0.67 0.56476
Target:  5'- gUGcgCGCUGAgcUGcCGCGCG-CGCGGCUu -3'
miRNA:   3'- gACa-GCGAUU--GC-GCGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 27606 0.68 0.542898
Target:  5'- -cGUCGUgucgAAgGCGCugauacCGUCGCGGUUg -3'
miRNA:   3'- gaCAGCGa---UUgCGCGu-----GCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 27410 0.68 0.521323
Target:  5'- uCUG-CGCgc-CGCuGCGCGUggCGCAGUCg -3'
miRNA:   3'- -GACaGCGauuGCG-CGUGCA--GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 27337 0.67 0.586845
Target:  5'- -cGUCGacuGCGC-CACG-CGCAGCg -3'
miRNA:   3'- gaCAGCgauUGCGcGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 27110 0.66 0.653733
Target:  5'- -aGUCggGCggcAGCGUGCGCGgUCGCGcgcucGCCg -3'
miRNA:   3'- gaCAG--CGa--UUGCGCGUGC-AGCGU-----CGG- -5'
28163 5' -55.4 NC_005887.1 + 26922 0.66 0.631409
Target:  5'- -aGUCGCUGGC-CGC-CGUCGaCgaacccugcuGGCCc -3'
miRNA:   3'- gaCAGCGAUUGcGCGuGCAGC-G----------UCGG- -5'
28163 5' -55.4 NC_005887.1 + 26833 0.71 0.373264
Target:  5'- -cGUgCGCgAGCGgGCGCGUCugccgGUAGCCg -3'
miRNA:   3'- gaCA-GCGaUUGCgCGUGCAG-----CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 26694 0.66 0.664871
Target:  5'- aUGUCGCgauACa-GC-CGUCGCgcGGCCg -3'
miRNA:   3'- gACAGCGau-UGcgCGuGCAGCG--UCGG- -5'
28163 5' -55.4 NC_005887.1 + 26499 0.7 0.419475
Target:  5'- --cUCGCgcggcuGCaGCGCGCGUucccgCGCGGCCg -3'
miRNA:   3'- gacAGCGau----UG-CGCGUGCA-----GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 26419 0.73 0.270112
Target:  5'- gCUGgcggccgCGCgggAACGCGCGC--UGCAGCCg -3'
miRNA:   3'- -GACa------GCGa--UUGCGCGUGcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 25535 0.72 0.330635
Target:  5'- -cGUCGCcgccgAGCgGUGCGCGuUCGUAGCUg -3'
miRNA:   3'- gaCAGCGa----UUG-CGCGUGC-AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 24935 0.71 0.347246
Target:  5'- uUGUCGaucgcGACGCGUGCG-CGCgGGCCg -3'
miRNA:   3'- gACAGCga---UUGCGCGUGCaGCG-UCGG- -5'
28163 5' -55.4 NC_005887.1 + 24236 0.67 0.59795
Target:  5'- aUG-CGCUGcuggccACGUGC-CGgcaGCAGCCa -3'
miRNA:   3'- gACaGCGAU------UGCGCGuGCag-CGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.