Results 61 - 80 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 24203 | 0.74 | 0.249829 |
Target: 5'- gUGUUGCcGACGUGCGUGUUGCcaAGCCg -3' miRNA: 3'- gACAGCGaUUGCGCGUGCAGCG--UCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 23662 | 0.68 | 0.51066 |
Target: 5'- -cGUCGgauACGgucaGCGCGUCGUAGUCg -3' miRNA: 3'- gaCAGCgauUGCg---CGUGCAGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 23596 | 0.68 | 0.521323 |
Target: 5'- -cGUaCGCUGccagcucacccGCGCGUuCGUCagcGCGGCCg -3' miRNA: 3'- gaCA-GCGAU-----------UGCGCGuGCAG---CGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 23550 | 0.69 | 0.45884 |
Target: 5'- -cGUaCGCUGACGcCGCcCGcaUCGCcGGCCg -3' miRNA: 3'- gaCA-GCGAUUGC-GCGuGC--AGCG-UCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 23396 | 0.77 | 0.153319 |
Target: 5'- gCUGcCGCUGGCagccugcagcaGCGCGucgaucagcuCGUCGCAGCCg -3' miRNA: 3'- -GACaGCGAUUG-----------CGCGU----------GCAGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 22832 | 0.73 | 0.256447 |
Target: 5'- -cGUCGagccAACGaGCACGUUGUAGCCg -3' miRNA: 3'- gaCAGCga--UUGCgCGUGCAGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 22614 | 0.66 | 0.620242 |
Target: 5'- --aUCGCU---GCGCGCGUCGCcuacuGGCa -3' miRNA: 3'- gacAGCGAuugCGCGUGCAGCG-----UCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 22608 | 0.67 | 0.586845 |
Target: 5'- aUGUCGau--CGCGgACGgcaugCGCAGCg -3' miRNA: 3'- gACAGCgauuGCGCgUGCa----GCGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 21673 | 0.68 | 0.50009 |
Target: 5'- gUGUCGCUGACGU-CGgGg-GCAGCUg -3' miRNA: 3'- gACAGCGAUUGCGcGUgCagCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 20959 | 0.67 | 0.575778 |
Target: 5'- uUGcUCGCUGuuccCGCGCugG-CGCuuggcGCCa -3' miRNA: 3'- gAC-AGCGAUu---GCGCGugCaGCGu----CGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 18642 | 0.66 | 0.664871 |
Target: 5'- aCUGgaaCGCcgcGACGaGCAUGUCGCccgcgaAGCCg -3' miRNA: 3'- -GACa--GCGa--UUGCgCGUGCAGCG------UCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 18409 | 0.72 | 0.291701 |
Target: 5'- -aGUCGCccgAACGuCGCAUGUCGCcgaugcGCCc -3' miRNA: 3'- gaCAGCGa--UUGC-GCGUGCAGCGu-----CGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 17955 | 0.66 | 0.663758 |
Target: 5'- -aGUCGCacauAUGCGCGgGcUCGCcggcaucGGCCg -3' miRNA: 3'- gaCAGCGau--UGCGCGUgC-AGCG-------UCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 17386 | 0.68 | 0.489617 |
Target: 5'- --cUCGCUGuugaACGCGCugGUCgaucacgucgGCGGCa -3' miRNA: 3'- gacAGCGAU----UGCGCGugCAG----------CGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 17354 | 0.68 | 0.489617 |
Target: 5'- -cGgCGUUuGCGCGCGCGgCGCcGCCc -3' miRNA: 3'- gaCaGCGAuUGCGCGUGCaGCGuCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 17343 | 0.68 | 0.50009 |
Target: 5'- ---aUGCUGACGCGCACa-UGCAGUa -3' miRNA: 3'- gacaGCGAUUGCGCGUGcaGCGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 17166 | 0.67 | 0.586845 |
Target: 5'- --aUCGCgaggcgugggAGCGCGCGaa-CGCGGCCg -3' miRNA: 3'- gacAGCGa---------UUGCGCGUgcaGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 16602 | 0.71 | 0.346402 |
Target: 5'- -aGUUGCUGACGCGCccacucgGCGcCgGCGGCg -3' miRNA: 3'- gaCAGCGAUUGCGCG-------UGCaG-CGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 16509 | 0.7 | 0.39133 |
Target: 5'- aUGUCGCaGGC-CGauCGCGUCGCcGCCg -3' miRNA: 3'- gACAGCGaUUGcGC--GUGCAGCGuCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 16199 | 0.67 | 0.575778 |
Target: 5'- -gGUgGUUGGCggggugguuGCGCGCGgCGCAGCg -3' miRNA: 3'- gaCAgCGAUUG---------CGCGUGCaGCGUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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