miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 32755 0.75 0.213045
Target:  5'- gUGcgCGCcGGCGCGCGCcaUGCAGCCg -3'
miRNA:   3'- gACa-GCGaUUGCGCGUGcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 15991 0.75 0.213045
Target:  5'- aUGUCGUgcGCGCGCAgaccCGcCGCgAGCCg -3'
miRNA:   3'- gACAGCGauUGCGCGU----GCaGCG-UCGG- -5'
28163 5' -55.4 NC_005887.1 + 13157 0.75 0.207386
Target:  5'- -cGUCGCUugcCGCGCGCG-CGCAGaCa -3'
miRNA:   3'- gaCAGCGAuu-GCGCGUGCaGCGUCgG- -5'
28163 5' -55.4 NC_005887.1 + 23396 0.77 0.153319
Target:  5'- gCUGcCGCUGGCagccugcagcaGCGCGucgaucagcuCGUCGCAGCCg -3'
miRNA:   3'- -GACaGCGAUUG-----------CGCGU----------GCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 7440 0.78 0.118949
Target:  5'- uUGgCGCUGGCGUGCGCGUCGUgaucGGCa -3'
miRNA:   3'- gACaGCGAUUGCGCGUGCAGCG----UCGg -5'
28163 5' -55.4 NC_005887.1 + 8082 0.71 0.373264
Target:  5'- -gGUCGUUcACgaaaGCGCGCG-CGCAGCUc -3'
miRNA:   3'- gaCAGCGAuUG----CGCGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 26833 0.71 0.373264
Target:  5'- -cGUgCGCgAGCGgGCGCGUCugccgGUAGCCg -3'
miRNA:   3'- gaCA-GCGaUUGCgCGUGCAG-----CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 7840 0.69 0.438905
Target:  5'- -gGUCGC-AGCGacaGCACGUCG-AGCa -3'
miRNA:   3'- gaCAGCGaUUGCg--CGUGCAGCgUCGg -5'
28163 5' -55.4 NC_005887.1 + 28288 0.7 0.429125
Target:  5'- ---aCGCcgAGCGCGCgcaGCGUCGUGGCg -3'
miRNA:   3'- gacaGCGa-UUGCGCG---UGCAGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 32578 0.7 0.429125
Target:  5'- -aGU-GCgUGACGCGCAUGUuccagugcacgUGCAGCCc -3'
miRNA:   3'- gaCAgCG-AUUGCGCGUGCA-----------GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 34570 0.7 0.419475
Target:  5'- aUGUCGaucguCGCGUucACGUaGCAGCCg -3'
miRNA:   3'- gACAGCgauu-GCGCG--UGCAgCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14184 0.7 0.419475
Target:  5'- -cGUCGaUUGcACGCGCuguCGggCGCGGCCu -3'
miRNA:   3'- gaCAGC-GAU-UGCGCGu--GCa-GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14026 0.7 0.419475
Target:  5'- ---cCGCcGGCGCGC-CGccggCGCAGCCu -3'
miRNA:   3'- gacaGCGaUUGCGCGuGCa---GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 41544 0.7 0.419475
Target:  5'- -aGgCGCUcGGCGCGCACG-CGaaguCAGCCa -3'
miRNA:   3'- gaCaGCGA-UUGCGCGUGCaGC----GUCGG- -5'
28163 5' -55.4 NC_005887.1 + 30203 0.7 0.409957
Target:  5'- --cUCGCcggccagccACGC-CGCGUCGCGGCCu -3'
miRNA:   3'- gacAGCGau-------UGCGcGUGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 30285 0.7 0.39133
Target:  5'- --aUCGUgc-CGCGCACGacguUCGCAGUCa -3'
miRNA:   3'- gacAGCGauuGCGCGUGC----AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 16509 0.7 0.39133
Target:  5'- aUGUCGCaGGC-CGauCGCGUCGCcGCCg -3'
miRNA:   3'- gACAGCGaUUGcGC--GUGCAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 8710 0.7 0.39133
Target:  5'- -cGcCGCggcgguaaGCGCuuCGUCGCGGCCa -3'
miRNA:   3'- gaCaGCGauug----CGCGu-GCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 40760 0.7 0.382226
Target:  5'- -cGcCGUUGGCGCGcCGCG-CGCcGCCg -3'
miRNA:   3'- gaCaGCGAUUGCGC-GUGCaGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 30793 0.71 0.373264
Target:  5'- uCUGcgCGCgaucaaUGGCGCGCAC--CGCGGCCu -3'
miRNA:   3'- -GACa-GCG------AUUGCGCGUGcaGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.