miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 16509 0.7 0.39133
Target:  5'- aUGUCGCaGGC-CGauCGCGUCGCcGCCg -3'
miRNA:   3'- gACAGCGaUUGcGC--GUGCAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 30285 0.7 0.39133
Target:  5'- --aUCGUgc-CGCGCACGacguUCGCAGUCa -3'
miRNA:   3'- gacAGCGauuGCGCGUGC----AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 9805 0.69 0.457832
Target:  5'- -aGUgGgUGAuugggccCGCGaaCGCGUCGCAGCCg -3'
miRNA:   3'- gaCAgCgAUU-------GCGC--GUGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 23550 0.69 0.45884
Target:  5'- -cGUaCGCUGACGcCGCcCGcaUCGCcGGCCg -3'
miRNA:   3'- gaCA-GCGAUUGC-GCGuGC--AGCG-UCGG- -5'
28163 5' -55.4 NC_005887.1 + 12084 0.69 0.477187
Target:  5'- -cGUCGCUcggucaggucaccGACGUGCugGcCGCGcagaagcGCCa -3'
miRNA:   3'- gaCAGCGA-------------UUGCGCGugCaGCGU-------CGG- -5'
28163 5' -55.4 NC_005887.1 + 41956 0.69 0.479248
Target:  5'- gUGcUCGCgugguGCGUGCGCGgcgCGCucGCCu -3'
miRNA:   3'- gAC-AGCGau---UGCGCGUGCa--GCGu-CGG- -5'
28163 5' -55.4 NC_005887.1 + 17386 0.68 0.489617
Target:  5'- --cUCGCUGuugaACGCGCugGUCgaucacgucgGCGGCa -3'
miRNA:   3'- gacAGCGAU----UGCGCGugCAG----------CGUCGg -5'
28163 5' -55.4 NC_005887.1 + 37397 0.68 0.489617
Target:  5'- ----aGCUGGCGCuGCGCGgUCGCGacuGCCu -3'
miRNA:   3'- gacagCGAUUGCG-CGUGC-AGCGU---CGG- -5'
28163 5' -55.4 NC_005887.1 + 12696 0.68 0.489617
Target:  5'- -cGUUGCagggucacGCGCGCACGcuggucgCGCAGCa -3'
miRNA:   3'- gaCAGCGau------UGCGCGUGCa------GCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 21673 0.68 0.50009
Target:  5'- gUGUCGCUGACGU-CGgGg-GCAGCUg -3'
miRNA:   3'- gACAGCGAUUGCGcGUgCagCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 40271 0.69 0.438905
Target:  5'- gCUGcCGCUGGcCG-GCAaGUCGguGCCg -3'
miRNA:   3'- -GACaGCGAUU-GCgCGUgCAGCguCGG- -5'
28163 5' -55.4 NC_005887.1 + 29474 0.69 0.438905
Target:  5'- -cGUCGUggAugGacaGCACGaugUCGUAGCCg -3'
miRNA:   3'- gaCAGCGa-UugCg--CGUGC---AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 30203 0.7 0.409957
Target:  5'- --cUCGCcggccagccACGC-CGCGUCGCGGCCu -3'
miRNA:   3'- gacAGCGau-------UGCGcGUGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 41544 0.7 0.419475
Target:  5'- -aGgCGCUcGGCGCGCACG-CGaaguCAGCCa -3'
miRNA:   3'- gaCaGCGA-UUGCGCGUGCaGC----GUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14026 0.7 0.419475
Target:  5'- ---cCGCcGGCGCGC-CGccggCGCAGCCu -3'
miRNA:   3'- gacaGCGaUUGCGCGuGCa---GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14184 0.7 0.419475
Target:  5'- -cGUCGaUUGcACGCGCuguCGggCGCGGCCu -3'
miRNA:   3'- gaCAGC-GAU-UGCGCGu--GCa-GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 34570 0.7 0.419475
Target:  5'- aUGUCGaucguCGCGUucACGUaGCAGCCg -3'
miRNA:   3'- gACAGCgauu-GCGCG--UGCAgCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 32578 0.7 0.429125
Target:  5'- -aGU-GCgUGACGCGCAUGUuccagugcacgUGCAGCCc -3'
miRNA:   3'- gaCAgCG-AUUGCGCGUGCA-----------GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 28288 0.7 0.429125
Target:  5'- ---aCGCcgAGCGCGCgcaGCGUCGUGGCg -3'
miRNA:   3'- gacaGCGa-UUGCGCG---UGCAGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 7840 0.69 0.438905
Target:  5'- -gGUCGC-AGCGacaGCACGUCG-AGCa -3'
miRNA:   3'- gaCAGCGaUUGCg--CGUGCAGCgUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.